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Rapid advance of experimental techniques provides an unprecedented in-depth view into complex developmental processes. Still, little is known on how the complexity of multicellular organisms evolved by elaborating developmental programs and…

Molecular Networks · Quantitative Biology 2021-07-16 Somya Mani , Tsvi Tlusty

In directed graphs, a cycle can be seen as a structure that allows its vertices to loop back to themselves, or as a structure that allows pairs of vertices to reach each other through distinct paths. We extend these concepts to temporal…

Computational Complexity · Computer Science 2025-03-05 Davi de Andrade , Júlio Araújo , Allen Ibiapina , Andrea Marino , Jason Schoeters , Ana Silva

In 2002, Tonchev first constructed some linear binary codes defined by the adjacency matrices of undirected graphs. So, graph is an important tool for searching optimum codes. In this paper, we introduce a new method of searching (proposed)…

Combinatorics · Mathematics 2014-04-01 Ruihu Li , Xueliang Li , Yaping Mao , Meiqin Wei

The median of a set of vertices $P$ of a graph $G$ is the set of all vertices $x$ of $G$ minimizing the sum of distances from $x$ to all vertices of $P$. In this paper, we present a linear time algorithm to compute medians in median graphs,…

Discrete Mathematics · Computer Science 2022-03-03 Laurine Bénéteau , Jérémie Chalopin , Victor Chepoi , Yann Vaxès

Let $G$ be a connected undirected graph on $n$ vertices with no loops but possibly multiedges. Given an arithmetical structure $(\textbf{r}, \textbf{d})$ on $G$, we describe a construction which associates to it a graph $G'$ on $n-1$…

Combinatorics · Mathematics 2021-06-10 Christopher Keyes , Tomer Reiter

The monography examines the problem of constructing a group of automorphisms of a graph. A graph automorphism is a mapping of a set of vertices onto itself that preserves adjacency. The set of such automorphisms forms a vertex group of a…

History and Overview · Mathematics 2024-07-18 Sergey Kurapov , Maxim Davidovsky

We revisit existing linear computation coding (LCC) algorithms, and introduce a new framework that measures the computational cost of computing multidimensional linear functions, not only in terms of the number of additions, but also with…

Information Theory · Computer Science 2024-01-17 Hans Rosenberger , Ali Bereyhi , Ralf R. Müller

Generalizations of linear numeration systems in which the set of natural numbers is recognizable by finite automata are obtained by describing an arbitrary infinite regular language following the lexicographic ordering. For these systems of…

Other Computer Science · Computer Science 2007-05-23 Pierre B. A. Lecomte , Michel Rigo

Graphs are mathematical tools that can be used to represent complex real-world interconnected systems, such as financial markets and social networks. Hence, machine learning (ML) over graphs has attracted significant attention recently.…

Machine Learning · Computer Science 2023-10-24 O. Deniz Kose , Yanning Shen , Gonzalo Mateos

Bipartite graphs model the relationships between two disjoint sets of entities in several applications and are naturally drawn as 2-layer graph drawings. In such drawings, the two sets of entities (vertices) are placed on two parallel lines…

The topological (or graph) structures of real-world networks are known to be predictive of multiple dynamic properties of the networks. Conventionally, a graph structure is represented using an adjacency matrix or a set of hand-crafted…

Social and Information Networks · Computer Science 2016-10-21 Cheng Li , Xiaoxiao Guo , Qiaozhu Mei

To date, the best circle graph recognition algorithm runs in almost linear time as it relies on a split decomposition algorithm that uses the union-find data-structure. We show that in the case of circle graphs, the PC-tree data-structure…

Data Structures and Algorithms · Computer Science 2026-01-01 Christophe Paul , Ignaz Rutter

Representing and exploiting multivariate signals requires capturing relations between variables, which we can represent by graphs. Graph dictionaries allow to describe complex relational information as a sparse sum of simpler structures,…

Machine Learning · Computer Science 2026-01-09 William Cappelletti , Pascal Frossard

Graph neural networks (GNNs) are deep learning architectures for machine learning problems on graphs. It has recently been shown that the expressiveness of GNNs can be characterised precisely by the combinatorial Weisfeiler-Leman algorithms…

Machine Learning · Computer Science 2022-01-11 Martin Grohe

A vertex subset $W\subseteq V$ of the graph $G = (V,E)$ is an independent dominating set if every vertex in $V\setminus W$ is adjacent to at least one vertex in $W$ and the vertices of $W$ are pairwise non-adjacent. We enumerate independent…

General Mathematics · Mathematics 2019-10-14 Somayeh Jahari , Saeid Alikhani

We introduce linear-state dataflows, a canonical model for a large set of visualization algorithms that we call data-linear visualizations. Our model defines a fixed dataflow architecture: partitioning and subpartitioning of input data,…

Graphics · Computer Science 2014-12-16 Thomas Baudel

We give a necessary and sufficient graph-theoretic characterization of toric ideals of graphs that are unimodular. As a direct consequence, we provide the structure of unimodular graphs by proving that the incidence matrix of a graph $G$ is…

Commutative Algebra · Mathematics 2025-10-15 Christos Tatakis

We study the duals of a certain class of finite-dimensional operator systems, namely the class of operator systems associated to tolerance relations on finite sets or equivalently the class of operator systems that are associated with…

Operator Algebras · Mathematics 2022-07-19 Mick Gielen , Walter D. van Suijlekom

Inspired by some recent development on the theory about projection valued dilations for operator valued measures or more generally bounded homomorphism dilations for bounded linear maps on Banach algebras, we explore a pure algebraic…

Operator Algebras · Mathematics 2015-04-28 Deguang Han , David R. Larson , Bei Liu , Rui Liu

We characterize the geometry and topology of the set of all weight vectors for which a linear neural network computes the same linear transformation $W$. This set of weight vectors is called the fiber of $W$ (under the matrix multiplication…

Machine Learning · Computer Science 2024-04-24 Jonathan Richard Shewchuk , Sagnik Bhattacharya