Related papers: The physical principles underpinning self-organiza…
Metabolism displays striking and robust regularities in the forms of modularity and hierarchy, whose composition may be compactly described. This renders metabolic architecture comprehensible as a system, and suggests the order in which…
The concept of evolutionary development of structures constituted a \emph{real} revolution in biology: it was possible to understand how the very complex structures of life can arise in an out-of-equilibrium system. The investigation of…
Biological systems reach hierarchical complexity that has no counterpart outside the realm of biology. Undoubtedly, biological entities obey the fundamental physical laws. Can today's physics provide an explanatory framework for…
We start from classical general relativity coupled to matter fields. Each configuration variable and its conjugate momentum, as also space-time points, are raised to the status of matrices [equivalently operators]. These matrices obey a…
Protein folding, peptide aggregation and crystallization, as well as adsorption of molecules on soft or solid substrates have an essential feature in common: In all these processes, structure formation is guided by a collective, cooperative…
We study a quantum theory based on two assumptions: In the intrinsic frame of reference of an isolated, macroscopic system, (i) the system has no global motion and is not entangled with any other system, (ii) time evolution of statevectors…
I present a microscopic framework in which quantum phenomena emerge from particle-particle interactions governed by Newton's second law of motion. Within this approach, stationary states and quantized energy spectra arise naturally for the…
There has been a body of works deriving the complex Hilbert space structure of quantum theory from axioms/principles/postulates to deepen our understanding about quantum theory and to reveal ways to go beyond it to resolve foundational…
Despite its enormous empirical success, the formalism of quantum theory still raises fundamental questions: why is nature described in terms of complex Hilbert spaces, and what modifications of it could we reasonably expect to find in some…
Till now, the foundation of quantum physics is still mysterious. To explore the mysteries in the foundation of quantum physics, people always take it for granted that quantum processes must be some types of fields/objects on a rigid space.…
Many problems in evolutionary theory are cast in dyadic terms, such as the polar oppositions of organism and environment. We argue that a triadic conceptual structure offers an alternative perspective under which the information generating…
We discuss the origin of causal set structure and the emergence of classical space and time in the universe. Given that the universe is a closed self-referential quantum automaton with a quantum register consisting of a vast number of…
We argue that space and space-time emerge as a consequence of dynamical collapse of the wave function of macroscopic objects. Locality and separability are properties of our approximate, emergent universe. At the fundamental level,…
A two boundary quantum mechanics without time ordered causal structure is advocated as consistent theory. The apparent causal structure of usual "near future" macroscopic phenomena is attributed to a cosmological asymmetry and to rules…
A general theory of nucleation for colloids and macromolecules in solution is formulated within the context of fluctuating hydrodynamics. A formalism for the determination of nucleation pathways is developed and stochastic differential…
At odds with a traditional view of molecular evolution that seeks a descent-with-modification relationship between functional sequences, new functions can emerge {\it de novo} with relative ease. At early times of molecular evolution,…
Modeling the spontaneous evolution of morphology in natural systems and its preservation by proportionate growth remains a major scientific challenge. Yet, it is conceivable that if the basic mechanisms of growth and the coupled kinetic…
The standard theory of cosmic structure formation posits that the present-day rich structure of the Universe developed through gravitational amplification of tiny matter density fluctuations generated in its very early history. Recent…
We report three-dimensional particle mechanics static calculations that predict the microstructure evolution during die-compaction of elastic spherical particles up to relative densities close to one. We employ a nonlocal contact…
Self-organization creates new order and shifts sub-boundaries while reorganizing energy and entropy within a control volume. This article examines pathway selection and tests whether maximizing the entropy generation rate can forecast…