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Interactive molecular graphics applications facilitate analysis of three dimensional protein structures. Naturally, non-interactive 2-D snapshots of the protein structures do not convey the same level of geometric detail. Several 2-D…

Quantitative Methods · Quantitative Biology 2014-02-24 Francis Bell , Chunyu Zhao , Ahmet Sacan

Vector fields are one of the fundamental parts of mathematics which are key for modelling many physics phenomena such as electromagnetic fields or fluid and gas flows. Fields found in nature often exhibit complex structures which can be…

Physics Education · Physics 2022-12-23 Piotr Nowakowski , Przemysław Rokita

Molecular dynamics (MD) simulations allow the exploration of the phase space of biopolymers through the integration of equations of motion of their constituent atoms. The analysis of MD trajectories often relies on the choice of collective…

Computational Physics · Physics 2017-05-11 Toni Giorgino , Alessandro Laio , Alex Rodriguez

Quantum computing is a rapidly evolving field that enables exponential speed-up over classical algorithms. At the heart of this revolutionary technology are quantum circuits, which serve as vital tools for implementing, analyzing, and…

Quantum Physics · Physics 2023-10-30 Zhen Wen , Yihan Liu , Siwei Tan , Jieyi Chen , Minfeng Zhu , Dongming Han , Jianwei Yin , Mingliang Xu , Wei Chen

We demonstrate the feasibility of integrating physics-based animations of solids and fluids with 3D Gaussian Splatting (3DGS) to create novel effects in virtual scenes reconstructed using 3DGS. Leveraging the coherence of the Gaussian…

Dynamic programming (DP) is a fundamental and powerful algorithmic paradigm taught in most undergraduate (and many graduate) algorithms classes. DP problems are challenging for many computer science students because they require identifying…

Computers and Society · Computer Science 2024-11-13 David H. Lee , Aditya Prasad , Ramiro Deo-Campo Vuong , Tianyu Wang , Eric Han , David Kempe

I have developed a code which allows images to be produced of a variety of interacting binaries for any system parameters. The resulting images are not only helpful in visualising the geometry of a given system but are also helpful in talks…

Astrophysics · Physics 2007-05-23 R. I. Hynes

Spectral datasets obtained at radio frequencies and optical/IR wavelengths are increasing in complexity as new facilities and instruments come online, resulting in an increased need to visualize and quantitatively analyze the velocity…

Instrumentation and Methods for Astrophysics · Physics 2010-01-14 Christopher J. Fluke , Jayanne English , David G. Barnes

We present Firefly, a new browser-based interactive tool for visualizing 3D particle data sets. On a typical personal computer, Firefly can simultaneously render and enable real-time interactions with > ~10 million particles, and can…

Instrumentation and Methods for Astrophysics · Physics 2023-07-24 Alexander B. Gurvich , Aaron M. Geller

As modern astronomy confronts unprecedented data volumes, automated pipelines and machine-learning techniques have become essential for processing and analysis. As these workflows grow more complex, astronomers also require input and…

Numerical modeling of electromagnetic waves is an important tool for understanding the interaction of light and matter, and lies at the core of computational electromagnetics. Traditional approaches to injecting and evolving electromagnetic…

Computational Physics · Physics 2023-07-12 K. Weichman , K. G. Miller , B. Malaca , W. B. Mori , J. R. Pierce , D. Ramsey , J. Vieira , M. Vranic , J. P. Palastro

We introduce the particle-hole map (PHM), a visualization tool to analyze electronic excitations in molecules in the time or frequency domain, to be used in conjunction with time-dependent density-functional theory (TDDFT) or other ab…

Chemical Physics · Physics 2015-10-15 Yonghui Li , Carsten A. Ullrich

We propose a new method for the construction and visualization of boxplot-type displays for functional data. We use a recent functional data analysis framework, based on a representation of functions called square-root slope functions, to…

Applications · Statistics 2017-02-07 Weiyi Xie , Sebastian Kurtek , Karthik Bharath , Ying Sun

The circular orbits and elliptical orbits of moving objects in a gravitational field are essential information in astronomy. There have been many methods developed in the literature and textbooks to describe these orbits. In this report, I…

Earth and Planetary Astrophysics · Physics 2024-02-22 Jixin Chen

Several visualization schemes have been developed for imaging materials at the atomic level through atom probe tomography. The main shortcoming of these tools is their inability to parallel process data using multi-core computing units to…

Materials Science · Physics 2012-02-07 Hari Dahal , Michael Stukowski , Matthias J. Graf , Alexander V. Balatsky , Krishna Rajan

We report on an exploratory project aimed at performing immersive 3D visualization of astronomical data, starting with spectral-line radio data cubes from galaxies. This work is done as a collaboration between the Department of Physics and…

Instrumentation and Methods for Astrophysics · Physics 2016-08-01 Gilles Ferrand , Jayanne English , Pourang Irani

An octopus program is demonstrated to generate electron energy levels in three-dimensional geometrical potential wells. The wells are modeled to have shapes similar to cone, pyramid and truncated-pyramid. To simulate the electron energy…

Computational Physics · Physics 2008-12-08 Teparksorn Pengpan

As the quantity and resolution of spectral-cubes from optical/infrared and radio surveys increase, desktop-based visualization and analysis solutions must adapt and evolve. Novel immersive 3D environments such as the CAVE2 at Monash…

Instrumentation and Methods for Astrophysics · Physics 2016-10-05 Dany Vohl , Christopher J. Fluke , Amr H. Hassan , David G. Barnes

We describe a simple experimental apparatus which allows one to observe the wave properties of light in a new way. This apparatus also makes possible to introduce and illustrate, in a very suggestive way, some fundamental principles of…

Physics Education · Physics 2018-03-28 Fabrizio Logiurato , Beniamino Danese , Luigi Gratton , Stefano Oss

In this paper we investigate the gravitational waves emission by stellar dynamical structures as complex systems in the quadrupole approximation considering bounded and unbounded orbits. Precisely, after deriving analytical expressions for…

General Relativity and Quantum Cosmology · Physics 2009-06-29 Ivana Bochicchio , Mariafelicia De Laurentis , Ettore Laserra