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This paper addresses the Restricted Longest Common Subsequence (RLCS) problem, an extension of the well-known Longest Common Subsequence (LCS) problem. This problem has significant applications in bioinformatics, particularly for…

Artificial Intelligence · Computer Science 2024-10-17 Marko Djukanović , Jaume Reixach , Ana Nikolikj , Tome Eftimov , Aleksandar Kartelj , Christian Blum

This paper describes substantial advances in the analysis (parsing) of diagrams using constraint grammars. The addition of set types to the grammar and spatial indexing of the data make it possible to efficiently parse real diagrams of…

cmp-lg · Computer Science 2008-02-03 Robert P. Futrelle , Nikos Nikolakis

Machine learning workflow development is a process of trial-and-error: developers iterate on workflows by testing out small modifications until the desired accuracy is achieved. Unfortunately, existing machine learning systems focus…

Databases · Computer Science 2018-12-17 Doris Xin , Stephen Macke , Litian Ma , Jialin Liu , Shuchen Song , Aditya Parameswaran

Sentence embedding tasks are important in natural language processing (NLP), but improving their performance while keeping them reliable is still hard. This paper presents a framework that combines pseudo-label generation and model ensemble…

Computation and Language · Computer Science 2025-01-28 Ziwei Liu , Qi Zhang , Lifu Gao

The conceptualization of a claim lies at the core of argument mining. The segregation of claims is complex, owing to the divergence in textual syntax and context across different distributions. Another pressing issue is the unavailability…

Computation and Language · Computer Science 2021-01-29 Shreya Gupta , Parantak Singh , Megha Sundriyal , Md Shad Akhtar , Tanmoy Chakraborty

Large Language Models (LLMs) have achieved impressive performance in complex reasoning problems. Their effectiveness highly depends on the specific nature of the task, especially the required domain knowledge. Existing approaches, such as…

Multiagent Systems · Computer Science 2025-11-20 Jiangwen Dong , Zehui Lin , Wanyu Lin , Mingjin Zhang

There has been a growing interest in causal learning in recent years. Commonly used representations of causal structures, including Bayesian networks and structural equation models (SEM), take the form of directed acyclic graphs (DAGs). We…

Machine Learning · Computer Science 2025-11-20 Pavel Rytir , Ales Wodecki , Jakub Marecek

Data augmentation is widely used for training a neural network given little labeled data. A common practice of augmentation training is applying a composition of multiple transformations sequentially to the data. Existing augmentation…

Machine Learning · Computer Science 2024-08-27 Dongyue Li , Kailai Chen , Predrag Radivojac , Hongyang R. Zhang

Complex network data is prevalent in various real-world domains, including physical, technological, and biological systems. Despite this prevalence, predicting trends and understanding behavioral patterns in complex systems remain…

Symbolic Computation · Computer Science 2026-01-22 Zezheng Song , Chunmei Wang , Haizhao Yang

For a text given in advance, the substring minimal suffix queries ask to determine the lexicographically minimal non-empty suffix of a substring specified by the location of its occurrence in the text. We develop a data structure answering…

Data Structures and Algorithms · Computer Science 2016-02-01 Tomasz Kociumaka

Graphs are a powerful tool for representing and analyzing unstructured, non-Euclidean data ubiquitous in the healthcare domain. Two prominent examples are molecule property prediction and brain connectome analysis. Importantly, recent works…

Machine Learning · Computer Science 2022-04-04 Kamilia Mullakaeva , Luca Cosmo , Anees Kazi , Seyed-Ahmad Ahmadi , Nassir Navab , Michael M. Bronstein

Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…

Data Structures and Algorithms · Computer Science 2012-11-01 Travis Gagie , Paweł Gawrychowski , Christopher Hoobin , Simon J. Puglisi

It has been shown in the indexing literature that there is an essential difference between prefix/range searches on the one hand, and predecessor/rank searches on the other hand, in that the former provably allows faster query resolution.…

Data Structures and Algorithms · Computer Science 2018-04-16 Djamal Belazzougui , Paolo Boldi , Rasmus Pagh , Sebastiano Vigna

In tasks like semantic parsing, instruction following, and question answering, standard deep networks fail to generalize compositionally from small datasets. Many existing approaches overcome this limitation with model architectures that…

Computation and Language · Computer Science 2023-07-06 Ekin Akyürek , Jacob Andreas

The escalating data scale in High-Energy Physics (HEP) fuels a growing aspiration for higher analytical efficiency. While Large Language Models (LLMs) offer a path toward automation via agentic AI, they struggle with complex scientific…

High Energy Physics - Experiment · Physics 2026-05-05 Junkun Jiao , Tong Liu , Ke Li , Weimin Song , Yipu Liao , Bolun Zhang , Beijiang Liu , Chang-Zheng Yuan , Yue Sun

The dictionary matching problem is to locate occurrences of any pattern among a set of patterns in a given text. Massive data sets abound and at the same time, there are many settings in which working space is extremely limited. We…

Data Structures and Algorithms · Computer Science 2013-01-29 Shoshana Marcus Dina Sokol

Retrieval-Augmented Generation (RAG) grounds large language models in external evidence, yet it still falters when answers must be pieced together across semantically distant documents. We close this gap with the Hierarchical Lexical Graph…

High-quality long-context data is essential for training large language models (LLMs) capable of processing extensive documents, yet existing synthesis approaches using relevance-based aggregation face challenges of computational…

Computation and Language · Computer Science 2025-09-22 Junlong Jia , Xing Wu , Chaochen Gao , Ziyang Chen , Zijia Lin , Zhongzhi Li , Weinong Wang , Haotian Xu , Donghui Jin , Debing Zhang , Binghui Guo

Modern deep learning models capture the semantics of complex data by transforming them into high-dimensional embedding vectors. Emerging applications, such as retrieval-augmented generation, use approximate nearest neighbor (ANN) search in…

Databases · Computer Science 2025-10-01 Guoyu Hu , Shaofeng Cai , Tien Tuan Anh Dinh , Zhongle Xie , Cong Yue , Gang Chen , Beng Chin Ooi

We present a paradigm for extensible lexicon development based on Lexical Conceptual Structure to support social engineering detection and response generation. We leverage the central notions of ask (elicitation of behaviors such as…

Computation and Language · Computer Science 2020-04-21 Archna Bhatia , Adam Dalton , Brodie Mather , Sashank Santhanam , Samira Shaikh , Alan Zemel , Tomek Strzalkowski , Bonnie J. Dorr