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Stochastically gated interfaces play an important role in a variety of cellular diffusion processes. Examples include intracellular transport via stochastically gated ion channels and pores in the plasma membrane of a cell, intercellular…

Statistical Mechanics · Physics 2026-01-21 Paul C Bressloff

Diffusion-based generative models have achieved promising results recently, but raise an array of open questions in terms of conceptual understanding, theoretical analysis, algorithm improvement and extensions to discrete, structured,…

Machine Learning · Computer Science 2022-09-01 Xingchao Liu , Lemeng Wu , Mao Ye , Qiang Liu

The classical models for irreversible diffusion-influenced reactions can be derived by introducing absorbing boundary conditions to over-damped continuous Brownian motion (BM) theory. As there is a clear corresponding stochastic process,…

Statistical Mechanics · Physics 2016-10-13 Mauricio J. Del Razo , Hong Qian

In this article, we propose a novel conservative diffuse-interface method for the simulation of immiscible compressible two-phase flows. The proposed method discretely conserves the mass of each phase, momentum and total energy of the…

Computational Physics · Physics 2020-06-11 Suhas S. Jain , Ali Mani , Parviz Moin

Switching dynamical systems provide a powerful, interpretable modeling framework for inference in time-series data in, e.g., the natural sciences or engineering applications. Since many areas, such as biology or discrete-event systems, are…

Machine Learning · Computer Science 2021-09-30 Lukas Köhs , Bastian Alt , Heinz Koeppl

A calculational approach in fluid turbulence is presented. Use is made of the attracting nature of the fluid-dynamic dynamical system. An approximate approach is offerred that effectively propagates the statistics in time. Loss of…

Fluid Dynamics · Physics 2007-05-23 Edsel A. Ammons

We introduce exact methods for the simulation of sample paths of one-dimensional diffusions with a discontinuity in the drift function. Our procedures require the simulation of finite-dimensional candidate draws from probability laws…

Methodology · Statistics 2017-01-24 Omiros Papaspiliopoulos , Gareth O. Roberts , Kasia B. Taylor

Recent advances in data-driven modeling have shown that diffusion models can successfully generate synthetic Lagrangian trajectories in turbulent flows. Building on this progress, we extend the method to the joint generation of pairs of…

We identify putative load-bearing structures (bridges) in experimental colloidal systems studied by confocal microscopy. Bridges are co-operative structures that have been used to explain stability and inhomogeneous force transmission in…

Soft Condensed Matter · Physics 2010-06-18 Matthew C. Jenkins , Mark D. Haw , Gary C. Barker , Wilson C. K. Poon , Stefan U. Egelhaaf

Transport phenomena are ubiquitous in nature and known to be important for various scientific domains. Examples can be found in physics, electrochemistry, heterogeneous catalysis, physiology, etc. To obtain new information about diffusive…

Probability · Mathematics 2007-05-23 Denis S. Grebenkov

An efficient discrete time and space Markov chain approximation employing a Brownian bridge correction for computing curvilinear boundary crossing probabilities for general diffusion processes was recently proposed in Liang and Borovkov…

Probability · Mathematics 2023-02-24 Vincent Liang , Konstantin Borovkov

Diffusion-mediated surface phenomena are crucial for human life and industry, with examples ranging from oxygen capture by lung alveolar surface to heterogeneous catalysis, gene regulation, membrane permeation and filtration processes.…

Statistical Mechanics · Physics 2020-08-19 Denis S. Grebenkov

Let $\{X_j\}$ be independent, identically distributed random variables. It is well known that the functional CUSUM statistic and its randomly permuted version both converge weakly to a Brownian bridge if second moments exist. Surprisingly,…

Statistics Theory · Mathematics 2008-12-18 Alexander Aue , István Berkes , Lajos Horváth

A simple fluid, described by point-like particles interacting via the Lennard-Jones potential, is considered under confinement in a slit geometry between two walls at distance Lz apart for densities inside the vapor-liquid coexistence…

Soft Condensed Matter · Physics 2009-11-13 Katarzyna Bucior , Leonid Yelash , Kurt Binder

We present the hybridization of flux reconstruction methods for advection-diffusion problems. Hybridization introduces a new variable into the problem so that it can be reduced via static condensation. This allows the solution of implicit…

Numerical Analysis · Mathematics 2023-10-25 Carlos A. Pereira , Brian C. Vermeire

A finite-time fluctuation theorem is proved for the diffusion-influenced surface reaction A<->B in a domain with any geometry where the species A and B undergo diffusive transport between the reservoir and the catalytic surface. A…

Statistical Mechanics · Physics 2018-12-24 Pierre Gaspard , Raymond Kapral

An improved diffuse boundary condition, where the number flux of the incoming real molecules on the wall surface is calculated using the molecular variables rather than the cell's macroscopic variables, is proposed to eliminate the…

Computational Physics · Physics 2014-03-18 Jun Li

This letter introduces a formalism for modeling time-variant channels for diffusive molecular communication systems. In particular, we consider a fluid environment where one transmitter nano-machine and one receiver nano-machine are…

Information Theory · Computer Science 2017-03-08 Arman Ahmadzadeh , Vahid Jamali , Adam Noel , Robert Schober

Event-based video reconstruction has garnered increasing attention due to its advantages, such as high dynamic range and rapid motion capture capabilities. However, current methods often prioritize the extraction of temporal information…

Computer Vision and Pattern Recognition · Computer Science 2024-07-16 Lin Zhu , Yunlong Zheng , Yijun Zhang , Xiao Wang , Lizhi Wang , Hua Huang

We address the dynamical and statistical description of stably stratified turbulent boundary layers with the important example of the atmospheric boundary layer with a stable temperature stratification in mind. Traditional approaches to…

Chaotic Dynamics · Physics 2009-02-18 Victor S. L'vov , Itamar Procaccia , Oleksii Rudenko