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We study preferential attachment (PA) trees with general attachment functions. PA suggests an intuitive monotonicity: if high-degree vertices are rewarded more strongly, then the resulting tree should become shallower. We examine this…

Probability · Mathematics 2026-05-22 Christian Mönch

The past decade has witnessed the development and success of coarse-grained network models of proteins for predicting many equilibrium properties related to collective modes of motion. Curiously, the results are usually robust towards the…

Biomolecules · Quantitative Biology 2010-02-04 Canan Atilgan , Osman Burak Okan , Ali Rana Atilgan

Active systems, from bacterial suspensions to cellular monolayers, are continuously driven out of equilibrium by local injection of energy from their constituent elements and exhibit turbulent-like and chaotic patterns. Here we demonstrate…

Soft Condensed Matter · Physics 2016-02-04 Amin Doostmohammadi , Michael F. Adamer , Sumesh P. Thampi , Julia M. Yeomans

This paper concerns the long term behaviour of a growth model describing a random sequential deposition of particles on a finite graph. The probability of allocating a particle at a vertex is proportional to a log-linear function of numbers…

Probability · Mathematics 2020-04-13 Mikhail Menshikov , Vadim Shcherbakov

In this paper, we introduce a spatial model for dormancy in random environment via a two-type branching random walk in continuous-time, where individuals can switch between dormant and active states through spontaneous switching independent…

Probability · Mathematics 2025-09-11 Helia Shafigh

Self-assembly of proteins is a biological phenomenon which gives rise to spontaneous formation of amyloid fibrils or polymers. The starting point of this phase, called nucleation exhibits an important variability among replicated…

Biomolecules · Quantitative Biology 2016-03-22 Marie Doumic , Sarah Eugene , Philippe Robert

A stochastic birth-death competition model for particles with excluded volume is proposed. The particles move, reproduce, and die on a regular lattice. While the death rate is constant, the birth rate is spatially nonlocal and implements…

Biological Physics · Physics 2017-06-29 Nagi Khalil , Cristóbal López , Emilio Hernández-García

The branching random walk is shown to be monotone decreasing in ascending direction of integer lattices as a corollary of an observation in regard to the lineage of particles from antisymmetric initial states, and a related property of…

Probability · Mathematics 2015-01-20 Achillefs Tzioufas

Stochastic reaction networks are mathematical models with a wide range of applications in biochemistry, ecology, and epidemiology, and are often complex to analyze. Except for some special cases, it is generally difficult to predict how the…

Probability · Mathematics 2026-04-02 Daniele Cappelletti , Giulio Cuniberti , Paola Siri

In this paper, we study "robust" dominating sets of random graphs that retain the domination property even if a small \emph{deterministic} set of edges are removed. We motivate our study by illustrating with examples from wireless networks…

Probability · Mathematics 2023-01-16 Ghurumuruhan Ganesan

The aim of this work is to demonstrate that the continuous-time frog model can spread arbitrary fast. The set of sites visited by an active particle can become infinite in a finite time.

Probability · Mathematics 2021-08-31 Viktor Bezborodov , Luca Di Persio , Tyll Krueger

Place an active particle at the root of a $d$-ary tree and a single dormant particle at each non-root site. In discrete time, active particles move towards the root with probability $p$ and, otherwise, away from the root to a uniformly…

Probability · Mathematics 2023-03-29 Emma Bailey , Matthew Junge , Jiaqi Liu

We present a general framework for modeling a wide selection of flocking scenarios under free boundary conditions. Several variants have been considered - including examples for the widely observed behavior of hierarchically interacting…

Physics and Society · Physics 2019-04-23 Yongnan Jia , Tamas Vicsek

We address the dynamics of interacting particles on a disordered lattice formed by a random comb. The dynamics comprises that of the asymmetric simple exclusion process, whereby motion to nearest-neighour sites that are empty is more likely…

Statistical Mechanics · Physics 2025-06-03 Mrinal Sarkar , Shamik Gupta

The successive discrete structures generated by a sequential algorithm from random input constitute a Markov chain that may exhibit long term dependence on its first few input values. Using examples from random graph theory and search…

Probability · Mathematics 2023-06-22 Rudolf Grübel

We introduce a stochastic agent-based model for the flocking dynamics of self-propelled particles that exhibit velocity-alignment interactions with neighbours within their field of view. The stochasticity in the dynamics of the model arises…

Statistical Mechanics · Physics 2019-07-24 Trilochan Bagarti , Shakti N. Menon

We study a model ecosystem by means of dynamical techniques from disordered systems theory. The model describes a set of species subject to competitive interactions through a background of resources, which they feed upon. Additionally…

Populations and Evolution · Quantitative Biology 2009-11-13 Yoshimi Yoshino , Tobias Galla , Kei Tokita

We solve an one-dimensional stochastic model of interacting particles on a chain. Particles can have branching and coagulation reactions, they can also appear on an empty site and disappear spontaneously. This model which can be viewed as…

Statistical Mechanics · Physics 2009-11-07 Mauro Mobilia , Pierre-Antoine Bares

This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

Molecular Networks · Quantitative Biology 2007-05-23 Eduardo D. Sontag

Contacts between individuals serve as pathways where infections may propagate. These contact patterns can be represented by network structures. Static structures have been the common modeling paradigm but recent results suggest that…

Populations and Evolution · Quantitative Biology 2012-04-25 Luis Enrique Correa Rocha , Adeline Decuyper , Vincent D Blondel
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