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Machine Learning tools are nowadays widely applied extensively to the prediction of the properties of molecular materials, using datasets extracted from high-throughput computational models. In several cases of scientific and technological…

Materials Science · Physics 2021-02-10 Fabio Le Piane , Matteo Baldoni , Francesco Mercuri

Recipe generation from food images and ingredients is a challenging task, which requires the interpretation of the information from another modality. Different from the image captioning task, where the captions usually have one sentence,…

Computer Vision and Pattern Recognition · Computer Science 2022-02-17 Hao Wang , Guosheng Lin , Steven C. H. Hoi , Chunyan Miao

The field of network science is a highly interdisciplinary area; for the empirical analysis of network data, it draws algorithmic methodologies from several research fields. Hence, research procedures and descriptions of the technical…

Social and Information Networks · Computer Science 2019-04-10 Eugenio Angriman , Alexander van der Grinten , Moritz von Looz , Henning Meyerhenke , Martin Nöllenburg , Maria Predari , Charilaos Tzovas

Mycotoxins, toxic secondary metabolites produced by certain fungi, pose significant threats to global food safety and public health. These compounds can contaminate a variety of crops, leading to economic losses and health risks to both…

Quantitative Methods · Quantitative Biology 2024-04-25 Alan Inglis , Andrew Parnell , Natarajan Subramani , Fiona Doohan

Networks effectively capture interactions among components of complex systems, and have thus become a mainstay in many scientific disciplines. Growing evidence, especially from biology, suggest that networks undergo changes over time, and…

Methodology · Statistics 2020-03-10 Ali Shojaie

This paper addresses the decomposition of biochemical networks into functional modules that preserve their dynamic properties upon interconnection with other modules, which permits the inference of network behavior from the properties of…

Molecular Networks · Quantitative Biology 2014-12-03 Hari Sivakumar , Stephen R. Proulx , João P. Hespanha

Within food webs, species can be partitioned into groups according to various criteria. Two notions have received particular attention: trophic groups, which have been used for decades in the ecological literature, and more recently,…

Populations and Evolution · Quantitative Biology 2015-04-14 Benoit Gauzens , Elisa Thébault , Gérard Lacroix , Stéphane Legendre

With the rising incidence of some diseases, such as obesity and diabetes, a healthy diet is arousing increasing attention. However, most existing food-related research efforts focus on recipe retrieval, user preference-based food…

Information Retrieval · Computer Science 2021-04-20 Wenjie Wang , Ling-yu Duan , Hao Jiang , Peiguang Jing , Xuemeng Song , Liqiang Nie

In recent years the machine learning techniques have shown a great potential in various problems from a multitude of disciplines, including materials design and drug discovery. The high computational speed on the one hand and the accuracy…

Chemical Physics · Physics 2018-05-09 Konstantin Gubaev , Evgeny V. Podryabinkin , Alexander V. Shapeev

Multi-language recipe personalisation and recommendation is an under-explored field of information retrieval in academic and production systems. The existing gaps in our current understanding are numerous, even on fundamental questions such…

Information Retrieval · Computer Science 2020-08-19 Niall Twomey , Mikhail Fain , Andrey Ponikar , Nadine Sarraf

Modular structure is pervasive in many complex networks of interactions observed in natural, social and technological sciences. Its study sheds light on the relation between the structure and function of complex systems. Generally speaking,…

Data Analysis, Statistics and Probability · Physics 2010-05-10 Alex Arenas , Javier Borge-Holthoefer , Sergio Gomez , Gorka Zamora-Lopez

Cooking is a unique endeavor that forms the core of our cultural identity. Culinary systems across the world have evolved over a period of time in the backdrop of complex interplay of diverse sociocultural factors including geographic,…

Physics and Society · Physics 2019-04-24 Rudraksh Tuwani , Nutan Sahoo , Navjot Singh , Ganesh Bagler

Given a food image, can a fine-grained object recognition engine tell "which restaurant which dish" the food belongs to? Such ultra-fine grained image recognition is the key for many applications like search by images, but it is very…

Computer Vision and Pattern Recognition · Computer Science 2015-12-11 Feng Zhou , Yuanqing Lin

Diseases involve complex processes and modifications to the cellular machinery. The gene expression profile of the affected cells contains characteristic patterns linked to a disease. Hence, biological knowledge pertaining to a disease can…

Quantitative Methods · Quantitative Biology 2020-04-13 Thomas Gaudelet , Noel Malod-Dognin , Jon Sanchez-Valle , Vera Pancaldi , Alfonso Valencia , Natasa Przulj

Nutrigenomics is an emerging field that explores the intricate interaction between genes and diet. This study aimed to develop a comprehensive database to help clinicians and patients understand the connections between genetic disorders,…

Quantitative Methods · Quantitative Biology 2025-06-25 Fahmida Hai , Shriya Samudrala , Ijeoma Ezengwa , Rubayat Khan , Saif Nirzhor , Don Roosan

Designing a neural network architecture for molecular representation is crucial for AI-driven drug discovery and molecule design. In this work, we propose a new framework for molecular representation learning. Our contribution is threefold:…

Machine Learning · Computer Science 2022-10-18 Jiye Kim , Seungbeom Lee , Dongwoo Kim , Sungsoo Ahn , Jaesik Park

Network science is an interdisciplinary endeavor, with methods and applications drawn from across the natural, social, and information sciences. A prominent problem in network science is the algorithmic detection of tightly-connected groups…

Data Analysis, Statistics and Probability · Physics 2010-07-14 Peter J. Mucha , Thomas Richardson , Kevin Macon , Mason A. Porter , Jukka-Pekka Onnela

Machine learning (ML) is transforming all areas of science. The complex and time-consuming calculations in molecular simulations are particularly suitable for a machine learning revolution and have already been profoundly impacted by the…

Chemical Physics · Physics 2019-11-11 Frank Noé , Alexandre Tkatchenko , Klaus-Robert Müller , Cecilia Clementi

Discovering new medicines is the hallmark of human endeavor to live a better and longer life. Yet the pace of discovery has slowed down as we need to venture into more wildly unexplored biomedical space to find one that matches today's high…

Artificial Intelligence · Computer Science 2022-02-16 Tri Minh Nguyen , Thin Nguyen , Truyen Tran

Engineering new glass compositions have experienced a sturdy tendency to move forward from (educated) trial-and-error to data- and simulation-driven strategies. In this work, we developed a computer program that combines data-driven…

Materials Science · Physics 2021-03-17 Daniel R. Cassar , Gisele G. dos Santos , Edgar D. Zanotto
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