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Current AMR simulations require algorithms that are highly parallelized and manage memory efficiently. As compute engines grow larger, AMR simulations will require algorithms that achieve new levels of efficient parallelization and memory…

Instrumentation and Methods for Astrophysics · Physics 2011-10-10 Jonathan Carroll-Nellenback , Brandon Shroyer , Adam Frank , Chen Ding

Nowadays the city-wide traffic contains hundreds of thousands of vehicles with different scenarios of their behavior. If a microscopic approach is used it leads to solving tremendous systems of ordinary differential equations whose…

Physics and Society · Physics 2016-10-19 Valentina Kurtc , Igor Anufriev

Merge trees are fundamental structures in topological data analysis. Interleaving distance is a widely accepted metric for comparing merge trees, with applications in visualization and scientific computing. While a greedy algorithm exists…

Computational Geometry · Computer Science 2025-09-22 Elena Farahbakhsh Touli , Talha Bin Masood

Calculating portions of eigenvalues and eigenvectors of matrices or matrix pencils has many applications. An approach to this calculation for Hermitian problems based on a density matrix has been proposed in 2009 and a software package…

Numerical Analysis · Mathematics 2014-04-11 Ping Tak Peter Tang , James Kestyn , Eric Polizzi

For the study of reactions in High Energy Physics (HEP) automatic computation systems have been developed and are widely used nowadays. GRACE is one of such systems and it has achieved much success in analyzing experimental data. Since we…

High Energy Physics - Phenomenology · Physics 2009-10-31 F. Yuasa , J. Fujimoto , T. Ishikawa , M. Jimbo , T. Kaneko , K. Kato , S. Kawabata , T. Kon , Y. Kurihara , M. Kuroda , N. Nakazawa , Y. Shimizu , H. Tanaka

Neuromorphic computing, characterized by its event-driven computation and massive parallelism, is particularly effective for handling data-intensive tasks in low-power environments, such as computing the minimum spanning tree (MST) for…

Emerging Technologies · Computer Science 2025-05-20 Yee Hin Chong , Peng Qu , Yuchen Li , Youhui Zhang

This paper presents a hierarchical planning algorithm for racing with multiple opponents. The two-stage approach consists of a high-level behavioral planning step and a low-level optimization step. By combining discrete and continuous…

Robotics · Computer Science 2026-04-29 Georg Jank , Matthias Rowold , Boris Lohmann

Planning for sequential robotics tasks often requires integrated symbolic and geometric reasoning. TAMP algorithms typically solve these problems by performing a tree search over high-level task sequences while checking for kinematic and…

We study computational aspects of the nonparametric maximum likelihood estimator (NPMLE) for the distribution function of bivariate interval censored data. The computation of the NPMLE consists of two steps: a parameter reduction step and…

Computation · Statistics 2012-01-12 Marloes H. Maathuis

Nonlinear differential equations rarely admit closed-form solutions, thus requiring numerical time-stepping algorithms to approximate solutions. Further, many systems characterized by multiscale physics exhibit dynamics over a vast range of…

Machine Learning · Computer Science 2020-08-26 Yuying Liu , J. Nathan Kutz , Steven L. Brunton

Treemaps have been widely applied to the visualization of hierarchical data. A treemap takes a weighted tree and visualizes its leaves in a nested planar geometric shape, with sub-regions partitioned such that each sub-region has an area…

Graphics · Computer Science 2023-09-01 Mehdi Behroozi , Reyhaneh Mohammadi , Cody Dunne

Given data, finding a faithful low-dimensional hyperbolic embedding of the data is a key method by which we can extract hierarchical information or learn representative geometric features of the data. In this paper, we explore a new method…

Machine Learning · Computer Science 2020-10-26 Rishi Sonthalia , Anna C. Gilbert

Minimizing wire-lengths is one of the most important objectives in circuit design. The process involves initially placing the logical units (cells) of a circuit onto a physical layout, and subsequently routing the wires to connect the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-02 Tobias Heuer

The $K$-core of a graph is the unique maximum subgraph within which each vertex connects to $K$ or more other vertices. The optimal $K$-core attack problem asks to delete the minimum number of vertices from the $K$-core to induce its…

Disordered Systems and Neural Networks · Physics 2024-06-17 Jianwen Zhou , Hai-Jun Zhou

In many areas of science and engineering, computer simulations are widely used as proxies for physical experiments, which can be infeasible or unethical. Such simulations can often be computationally expensive, and an emulator can be…

Machine Learning · Statistics 2023-02-03 Tao Tang , Simon Mak , David Dunson

The segment tree is an extremely versatile data structure. In this paper, a new heap based implementation of segment trees is proposed. In such an implementation of segment tree, the structural information associated with the tree nodes can…

Data Structures and Algorithms · Computer Science 2018-07-17 Lei Wang , Xiaodong Wang

We describe the use of Graphics Processing Units (GPUs) for speeding up the code NBODY6 which is widely used for direct $N$-body simulations. Over the years, the $N^2$ nature of the direct force calculation has proved a barrier for…

Instrumentation and Methods for Astrophysics · Physics 2015-06-05 Keigo Nitadori , Sverre J. Aarseth

We present an algorithm for the Merkle tree traversal problem which combines the efficient space-time trade-off from the fractal Merkle tree [3] and the space efficiency from the improved log space-time Merkle trees traversal [8]. We give…

Cryptography and Security · Computer Science 2014-09-16 Markus Knecht , Willi Meier , Carlo U. Nicola

This paper presents a new algorithm for the fast, shared memory, multi-core computation of augmented contour trees on triangulations. In contrast to most existing parallel algorithms our technique computes augmented trees, enabling the full…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-02-14 Charles Gueunet , P. Fortin , J Jomier , J Tierny

High fidelity scientific simulations modeling physical phenomena typically require solving large linear systems of equations which result from discretization of a partial differential equation (PDE) by some numerical method. This step often…

Mathematical Software · Computer Science 2020-07-01 Mohammad Shafaet Islam , Qiqi Wang