Related papers: The isomorphic version of Brualdies nestedness is …
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
Many problems in computer science and applied mathematics require rounding a vector $\mathbf{w}$ of fractional values lying in the interval $[0,1]$ to a binary vector $\mathbf{x}$ so that, for a given matrix $\mathbf{A}$,…
Multiple network alignment is the problem of identifying similar and related regions in a given set of networks. While there are a large number of effective techniques for pairwise problems with two networks that scale in terms of edges,…
Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…
In this paper we develop three characterizations for isomorphism of graphs. The first characterization is obtained by associating certain bitableaux with the graphs. We order these bitableaux by suitably defined lexicographic order and…
The origins of the notion of matchings in groups spawn from a linear algebra problem proposed by E. K. Wakeford [24] which was tackled in 1996 [10]. In this paper, we first discuss unmatchable subsets in abelian groups. Then we formulate…
In the context of finite mixture models one considers the problem of classifying as many observations as possible in the classes of interest while controlling the classification error rate in these same classes. Similar to what is done in…
The notion of fractional minimal rank of a partial matrix is introduced, a quantity that lies between the triangular minimal rank and the minimal rank of a partial matrix. The fractional minimal rank of partial matrices whose bipartite…
We investigate the complexity of isomorphism relations for classes of finitely generated and n-generated computably enumerable (c.e.) algebras, presented via c.e. presentations -- that is, as quotients of term algebras over decidable sets…
Borrowing inspiration from Marcone and Mont\'{a}lban's one-one correspondence between the class of signed trees and the equimorphism classes of indecomposable scattered linear orders, we find a subclass of signed trees which has an…
Perfect matching width is a treewidth-like parameter designed for graphs with perfect matchings. The concept was originally introduced by Norine for the study of non-bipartite Pfaffian graphs. Additionally, perfect matching width appears to…
The problem of biclustering consists of the simultaneous clustering of rows and columns of a matrix such that each of the submatrices induced by a pair of row and column clusters is as uniform as possible. In this paper we approximate the…
Quantifying the similarity between two graphs is a fundamental algorithmic problem at the heart of many data analysis tasks for graph-based data. In this paper, we study the computational complexity of a family of similarity measures based…
An expander code is a binary linear code whose parity-check matrix is the bi-adjacency matrix of a bipartite expander graph. We provide a new formula for the minimum distance of such codes. We also provide a new proof of the result that…
In this paper we address the problem of matching patterns in the so-called verification setting in which a novel, query pattern is verified against a single training pattern: the decision sought is whether the two match (i.e. belong to the…
Multilayer bootstrap network builds a gradually narrowed multilayer nonlinear network from bottom up for unsupervised nonlinear dimensionality reduction. Each layer of the network is a nonparametric density estimator. It consists of a group…
Nazarov and Tarasov recently generalized the notion of the rank of a partition to skew partitions. We give several characterizations of the rank of a skew partition and one possible characterization that remains open. One of the…
The notion of a layered triangulation of a lens space was defined by Jaco and Rubinstein in earlier work, and, unless the lens space is L(3,1), a layered triangulation with the minimal number of tetrahedra was shown to be unique and termed…
Let $\mathfrak{M}$ be a class of metric spaces. A metric space $Y$ is minimal $\mathfrak{M}$-universal if every $X\in\mathfrak{M}$ can be isometrically embedded in $Y$ but there are no proper subsets of $Y$ satisfying this property. We find…
The Brualdi-Solheid problem asks which graph achieves the extremal (maximum or minimum) spectral radius for a given class of graphs. This paper addresses the Brualdi-Solheid problem for \( \mathcal{G}_{n,\beta} \), the family of graphs with…