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Simple nonlinear dynamical systems with multiple stable stationary states are often taken as models for switchlike biological systems. This paper considers the interaction of multiple such simple multistable systems when they are embedded…

Quantitative Methods · Quantitative Biology 2008-04-10 Dennis Cates Wylie

Continuously-observed event occurrences, often exhibit self- and mutually-exciting effects, which can be well modeled using temporal point processes. Beyond that, these event dynamics may also change over time, with certain periodic trends.…

Machine Learning · Computer Science 2024-03-11 Sikun Yang , Hongyuan Zha

Biochemical reaction networks are subjected to large fluctuations attributable to small molecule numbers, yet underlie reliable biological functions. Most theoretical approaches describe them as purely deterministic or stochastic dynamical…

Molecular Networks · Quantitative Biology 2013-06-11 Jingkui Wang , Marc Lefranc , Quentin Thommen

We describe a chain of unidirectionally coupled adaptive excitable elements slowly driven by a stochastic process from one end and open at the other end, as a minimal toy model of unresolved irreducible uncertainty in a system performing…

Neurons and Cognition · Quantitative Biology 2022-09-14 Mario Martinez-Saito

Recurrent networks of non-linear units display a variety of dynamical regimes depending on the structure of their synaptic connectivity. A particularly remarkable phenomenon is the appearance of strongly fluctuating, chaotic activity in…

Neurons and Cognition · Quantitative Biology 2017-05-10 Francesca Mastrogiuseppe , Srdjan Ostojic

The ability to reliably predict critical transitions in dynamical systems is a long-standing goal of diverse scientific communities. Previous work focused on early warning signals related to local bifurcations (critical slowing down) and…

Adaptation and Self-Organizing Systems · Physics 2017-11-15 Rajat Karnatak , Holger Kantz , Stephan Bialonski

Highly connected recurrent neural networks often produce chaotic dynamics, meaning their precise activity is sensitive to small perturbations. What are the consequences for how such networks encode streams of temporal stimuli? On the one…

Neurons and Cognition · Quantitative Biology 2016-12-16 Guillaume Lajoie , Kevin K Lin , Jean-Philippe Thivierge , Eric Shea-Brown

Randomly connected networks of excitatory and inhibitory spiking neurons provide a parsimonious model of neural variability, but are notoriously unreliable for performing computations. We show that this difficulty is overcome by…

Neurons and Cognition · Quantitative Biology 2017-01-11 Ryan Pyle , Robert Rosenbaum

We consider the pattern formation problem in coupled identical systems after the global synchronized state becomes unstable. Based on analytical results relating the coupling strengths and the instability of each spatial mode (pattern) we…

Pattern Formation and Solitons · Physics 2009-11-10 Govindan Rangarajan , Yonghong Chen , Mingzhou Ding

The emergence of macroscopic order and patterns is a central paradigm in systems of (self-)propelled agents, and a key component in the structuring of many biological systems.The relationships between the ordering process and the underlying…

Soft Condensed Matter · Physics 2020-12-02 Jonas Denk , Erwin Frey

This study introduces a novel theoretical framework, the Stacked Autoencoder Evolution Hypothesis, which proposes that biological evolutionary systems operate through multi-layered self-encoding and decoding processes, analogous to stacked…

Neural and Evolutionary Computing · Computer Science 2026-02-03 Hiroyuki Iizuka

Elastic structures can be designed to exhibit precise, complex, and exotic functions. While recent work has focused on the quasistatic limit governed by force balance, the mechanics at a finite driving rate are governed by Newton's…

Soft Condensed Matter · Physics 2024-12-17 Marc Berneman , Daniel Hexner

Small-world networks describe many important practical systems among which neural networks consisting of excitable nodes are the most typical ones. In this paper we study self-sustained oscillations of target waves in excitable small-world…

Adaptation and Self-Organizing Systems · Physics 2011-11-23 Yu Qian , Xiaodong Huang , Gang Hu , Xuhong Liao

We present exact results, as well as some illustrative Monte Carlo simulations, concerning a stochastic network with weighted connections in which the fraction of nodes that are dynamically synchronized is a parameter. This allows one to…

Disordered Systems and Neural Networks · Physics 2007-05-23 J. Marro , J. J. Torres , J. M. Cortes , B. Wemmenhove

During tissue development, patterns of gene expression determine the spatial arrangement of cell types. In many cases, gradients of secreted signaling molecules - morphogens - guide this process. The continuous positional information…

Molecular Networks · Quantitative Biology 2017-02-08 Ruben Perez-Carrasco , Pilar Guerrero , James Briscoe , Karen Page

The seemingly stochastic transient dynamics of neocortical circuits observed in vivo have been hypothesized to represent a signature of ongoing stochastic inference. In vitro neurons, on the other hand, exhibit a highly deterministic…

Neurons and Cognition · Quantitative Biology 2017-03-14 Mihai A. Petrovici , Johannes Bill , Ilja Bytschok , Johannes Schemmel , Karlheinz Meier

Recurrent neural networks with balanced excitation and inhibition exhibit irregular asynchronous dynamics, which is fundamental for cortical computations. Classical balance mechanisms require strong external inputs to sustain finite firing…

Neurons and Cognition · Quantitative Biology 2025-10-21 David Angulo-Garcia , Alessandro Torcini

Fully developed turbulence is a universal and scale-invariant chaotic state characterized by an energy cascade from large to small scales where the cascade is eventually arrested by dissipation. In this article, we show how to harness these…

Soft Condensed Matter · Physics 2024-04-09 Xander M. de Wit , Michel Fruchart , Tali Khain , Federico Toschi , Vincenzo Vitelli

A dynamical system approaching the first-order transition can exhibit a specific type of critical behavior known as self-organized bistability (SOB). It lies in the fact that the system can permanently switch between the coexisting states…

Adaptation and Self-Organizing Systems · Physics 2022-11-14 Nikita Frolov , Alexander Hramov

The three-dimensional (3D) Fitzhugh-Nagumo neuron model with inertia was shown to exhibit a chaotic mixed-mode dynamics composed of large-amplitude spikes separated by an irregular number of small-amplitude chaotic oscillations. In contrast…

Adaptation and Self-Organizing Systems · Physics 2023-01-25 Marzena Ciszak , Salvador Balle , Oreste Piro , Francesco Marino
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