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A new model for biological growth is introduced that couples the geometry of an organism (or part of the organism) to the flow and deposition of material. The model has three dynamical variables (a) a Riemann metric tensor for the geometry,…

Biological Physics · Physics 2010-10-05 Julia Pulwicki , David Hobill

In the statistical analysis of shape a goal beyond the analysis of static shapes lies in the quantification of `same' deformation of different shapes. Typically, shape spaces are modelled as Riemannian manifolds on which parallel transport…

Methodology · Statistics 2010-02-04 Stephan Huckemann

We derive a course grained, continuum model of the 2D vertex model, applicable for different underlying geometries, and allowing for analytical analysis of an otherwise numerical model. Using a geometric approach and out--of--equilibrium…

Soft Condensed Matter · Physics 2022-08-31 Doron Grossman , Jean-Francois Joanny

This paper introduces a novel computational framework for modeling and analyzing the spatiotemporal shape variability of tree-like 4D structures whose shapes deform and evolve over time. Tree-like 3D objects, such as botanical trees and…

Computational Geometry · Computer Science 2025-09-24 Tahmina Khanam , Hamid Laga , Mohammed Bennamoun , Guanjin Wang , Ferdous Sohel , Farid Boussaid , Guan Wang , Anuj Srivastava

What are the general principles that allow proper growth of a tissue or an organ? A growing leaf is an example of such a system: it increases its area by orders of magnitude, maintaining a proper (usually flat) shape. How can this be…

Tissues and Organs · Quantitative Biology 2020-05-13 S. Armon , M. Moshe , E. Sharon

The three-dimensional shapes of thin lamina such as leaves, flowers, feathers, wings etc, are driven by the differential strain induced by the relative growth. The growth takes place through variations in the Riemannian metric, given on the…

Analysis of PDEs · Mathematics 2014-01-09 Marta Lewicka , L. Mahadevan , Mohammad Reza Pakzad

Cell proliferation, apoptosis, and myosin-dependent contraction can generate elastic stress and strain in living tissues, which may be dissipated by internal rearrangement through cell topological transition and cytoskeletal reorganization.…

Biological Physics · Physics 2021-12-07 Chaozhen Wei , Min Wu

The simulation of growth processes within soft biological tissues is of utmost importance for many applications in the medical sector. Within this contribution we propose a new macroscopic approach fro modelling stress-driven volumetric…

Computational Engineering, Finance, and Science · Computer Science 2022-01-21 L. Lamm , H. Holthusen , T. Brepols , S. Jockenhövel , S. Reese

Thin growing tissues (such as plant leaves) can be modelled by a bounded domain $S\subset R^2$ endowed with a Riemannian metric $g$, which models the internal strains caused by the differential growth of the tissue. The elastic energy is…

Soft Condensed Matter · Physics 2014-11-05 Peter Hornung

In the past 50 years, the formalism of L-systems has been successfully used and developed to model the growth of filamentous and branching biological forms. These simulations take place in classical 2-D or 3-D Euclidean spaces. However,…

Quantitative Methods · Quantitative Biology 2025-07-02 Christophe Godin , Frédéric Boudon

In this paper we address some modelling issues related to biological growth. Our treatment is based on a recently-proposed, general formulation for growth within the context of Mixture Theory (Journal of the Mechanics and Physics of Solids,…

Tissues and Organs · Quantitative Biology 2011-11-09 H. Narayanan , E. M. Arruda , K. Grosh , K. Garikipati

Tissue growth can be modeled in two dimension by only using circular granular cells, which can grow and produce child. Linear spring-dashpot model is used to bind the cells with a cut-off interaction range of 1.1 times sum of radii of…

Biological Physics · Physics 2014-05-21 Sparisoma Viridi , Siti Nurul Khotimah , Devi Aprianti , Luman Haris , Freddy Haryanto

In this paper we formulate a geometric theory of the mechanics of growing solids. Bulk growth is modeled by a material manifold with an evolving metric. Time dependence of metric represents the evolution of the stress-free (natural)…

Differential Geometry · Mathematics 2015-05-14 Arash Yavari

4-dim intrinsic (material) Riemannian metric $G$ of the material 4-D space-time continuum $P$ is utilized as the characteristic of the aging processes developing in the material. Manifested through variation of basic material…

Mathematical Physics · Physics 2016-09-07 A. Chudnovsky , S. Preston

In this paper, we formulate a geometric theory of the mechanics of arterial growth. An artery is modeled as a finite-length thick shell that is made of an incompressible nonlinear anisotropic solid. An initial radially-symmetric…

Soft Condensed Matter · Physics 2025-11-18 Aditya Kumar , Arash Yavari

This paper reviews several Riemannian metrics and evolution equations in the context of diffeomorphic shape analysis. After a short review of of various approaches at building Riemannian spaces of shapes, with a special focus on the…

Differential Geometry · Mathematics 2022-05-04 Nicolas Charon , Laurent Younes

We propose the first comprehensive approach for modeling and analyzing the spatiotemporal shape variability in tree-like 4D objects, i.e., 3D objects whose shapes bend, stretch, and change in their branching structure over time as they…

Computer Vision and Pattern Recognition · Computer Science 2024-08-23 Tahmina Khanam , Hamid Laga , Mohammed Bennamoun , Guanjin Wang , Ferdous Sohel , Farid Boussaid , Guan Wang , Anuj Srivastava

Developing clinically viable tissue-engineered cardiovascular implants remains a formidable challenge. Achieving reliable and durable outcomes requires a deeper understanding of the fundamental mechanisms driving tissue evolution during in…

Computational Engineering, Finance, and Science · Computer Science 2025-07-29 Mahmoud Sesa , Hagen Holthusen , Christian Böhm , Stefan Jockenhövel , Stefanie Reese , Kevin Linka

Growth-elasticity is a powerful model framework for understanding complex shape development in soft biological tissues. At each instant, by mapping how continuum building blocks have grown geometrically and how they respond elastically to…

Numerical Analysis · Mathematics 2024-10-23 Min Wu

The innumerable shapes of plant leaves present a challenge to the explanatory power of biophysical theory. A model is needed that can produce these shapes with a small set of parameters. This paper presents a simple model of leaf shape…

Tissues and Organs · Quantitative Biology 2010-04-27 David A. Young
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