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Biclustering is used for simultaneous clustering of the observations and variables when there is no group structure known \textit{a priori}. It is being increasingly used in bioinformatics, text analytics, etc. Previously, biclustering has…

Methodology · Statistics 2020-09-14 Wangshu Tu , Sanjeena Subedi

Nonnegative matrix factorization (NMF) is a widely used tool for learning parts-based, low-dimensional representations of nonnegative data, with applications in vision, text, and bioinformatics. In clustering applications, orthogonal NMF…

Machine Learning · Computer Science 2025-12-10 Manh Nguyen , Daniel Pimentel-Alarcón

Background: Mining gene modules from genomic data is an important step to detect gene members of pathways or other relations such as protein-protein interactions. In this work, we explore the plausibility of detecting gene modules by…

Machine Learning · Computer Science 2017-05-12 YaoGong Zhang , YingJie Xu , Xin Fan , YuXiang Hong , Jiahui Liu , ZhiCheng He , YaLou Huang , MaoQiang Xie

Non-negative matrix factorization (NMF) is a technique for finding latent representations of data. The method has been applied to corpora to construct topic models. However, NMF has likelihood assumptions which are often violated by real…

Machine Learning · Statistics 2017-11-22 Skyler Seto , Sarah Tan , Giles Hooker , Martin T. Wells

Nonnegative matrix factorization (NMF) has become a workhorse for signal and data analytics, triggered by its model parsimony and interpretability. Perhaps a bit surprisingly, the understanding to its model identifiability---the major…

Signal Processing · Electrical Eng. & Systems 2019-03-27 Xiao Fu , Kejun Huang , Nicholas D. Sidiropoulos , Wing-Kin Ma

In this paper, we propose a provably correct algorithm for convolutive nonnegative matrix factorization (CNMF) under separability assumptions. CNMF is a convolutive variant of nonnegative matrix factorization (NMF), which functions as an…

Machine Learning · Computer Science 2019-11-15 Anthony Degleris , Nicolas Gillis

We validate the use of matrix factorization for the automatic identification of relevant components from atomic pair distribution function (PDF) data. We also present a newly developed software infrastructure for analyzing the PDF data…

Text clustering methods were traditionally incorporated into multi-document summarization (MDS) as a means for coping with considerable information repetition. Particularly, clusters were leveraged to indicate information saliency as well…

Computation and Language · Computer Science 2022-05-23 Ori Ernst , Avi Caciularu , Ori Shapira , Ramakanth Pasunuru , Mohit Bansal , Jacob Goldberger , Ido Dagan

We have measured the dissimilarities among several printed characters of a single page in the Gutenberg 42-line bible and we prove statistically the existence of several different matrices from which the metal types where constructed. This…

Machine Learning · Statistics 2010-02-04 Aureli Alabert , Luz Ma. Rangel

Non-negative matrix factorisation (NMF) is a widely used tool for unsupervised learning and feature extraction, with applications ranging from genomics to text analysis and signal processing. Standard formulations of NMF are typically…

Machine Learning · Computer Science 2026-03-11 Elisabeth Sommer James , Asger Hobolth , Marta Pelizzola

Low dimensional nonlinear structure abounds in datasets across computer vision and machine learning. Kernelized matrix factorization techniques have recently been proposed to learn these nonlinear structures for denoising, classification,…

Machine Learning · Computer Science 2021-06-01 Jicong Fan , Chengrun Yang , Madeleine Udell

Non-negative matrix factorization (NMF) is widely used as a feature extraction technique for matrices with non-negative entries, such as image data, purchase histories, and other types of count data. In NMF, a non-negative matrix is…

Computation · Statistics 2026-01-01 Ryo Ohashi , Hiroyasu Abe , Fumitake Sakaori

Nonnegative Matrix Factorization (NMF) aims to factorize a matrix into two optimized nonnegative matrices appropriate for the intended applications. The method has been widely used for unsupervised learning tasks, including recommender…

Machine Learning · Statistics 2015-07-14 Junyu Xuan , Jie Lu , Guangquan Zhang , Richard Yi Da Xu , Xiangfeng Luo

Community detection is a fundamental task in social network analysis. In this paper, first we develop an endorsement filtered user connectivity network by utilizing Heider's structural balance theory and certain Twitter triad patterns.…

Social and Information Networks · Computer Science 2016-08-08 Mert Ozer , Nyunsu Kim , Hasan Davulcu

A common approach to analyze a covariate-sample count matrix, an element of which represents how many times a covariate appears in a sample, is to factorize it under the Poisson likelihood. We show its limitation in capturing the tendency…

Methodology · Statistics 2017-10-06 Mingyuan Zhou

Non-negative matrix factorization (NMF) has proved effective in many clustering and classification tasks. The classic ways to measure the errors between the original and the reconstructed matrix are $l_2$ distance or Kullback-Leibler (KL)…

Computer Vision and Pattern Recognition · Computer Science 2014-05-12 Le Li , Jianjun Yang , Kaili Zhao , Yang Xu , Honggang Zhang , Zhuoyi Fan

Dimensionality reduction is considered as an important step for ensuring competitive performance in unsupervised learning such as anomaly detection. Non-negative matrix factorization (NMF) is a popular and widely used method to accomplish…

Machine Learning · Computer Science 2021-02-08 Imtiaz Ahmed , Xia Ben Hu , Mithun P. Acharya , Yu Ding

Nonnegative matrix factorization (NMF), a dimensionality reduction and factor analysis method, is a special case in which factor matrices have low-rank nonnegative constraints. Considering the stochastic learning in NMF, we specifically…

Numerical Analysis · Computer Science 2018-04-05 Hiroyuki Kasai

Text clustering serves as a fundamental technique for organizing and interpreting unstructured textual data, particularly in contexts where manual annotation is prohibitively costly. With the rapid advancement of Large Language Models…

Computation and Language · Computer Science 2025-10-08 Chen Huang , Guoxiu He

This study presents a novel integration of unsupervised learning and decision-making strategies for the advanced analysis of 4D-STEM datasets, with a focus on non-negative matrix factorization (NMF) as the primary clustering method. Our…

Machine Learning · Computer Science 2025-11-18 Junhao Cao , Nicolas Folastre , Gozde Oney , Edgar Rauch , Stavros Nicolopoulos , Partha Pratim Das , Arnaud Demortière