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Genomic distance between two genomes, i.e., the smallest number of genome rearrangements required to transform one genome into the other, is often used as a measure of evolutionary closeness of the genomes in comparative genomics studies.…

Genomics · Quantitative Biology 2011-03-30 Shuai Jiang , Max A. Alekseyev

A permutation graph is a graph whose edges are given by inversions of a permutation. We study the Abelian sandpile model (ASM) on such graphs. We exhibit a bijection between recurrent configurations of the ASM on permutation graphs and the…

Combinatorics · Mathematics 2018-10-08 Mark Dukes , Thomas Selig , Jason P. Smith , Einar Steingrimsson

Motivated by the problem of constructing bijective maps with low differential uniformity, we introduce the notion of permutation resemblance of a function, which looks to measure the distance a given map is from being a permutation. We…

Information Theory · Computer Science 2023-02-08 Li-An Chen , Robert S. Coulter

Symmetry-protected topological phases protected by crystalline symmetries and internal symmetries are shown to enjoy a fascinating one-to-one correspondence in classification. Here we investigate the physics content behind the abstract…

Strongly Correlated Electrons · Physics 2026-05-07 Jian-Hao Zhang , Shang-Qiang Ning

The poset of permutations of [n] under Bruhat ordering is studied. We give nontrivial upper and lower bounds for the number of comparable pairs of permutations in both the weak and strong versions of this order. In light of numerical…

Probability · Mathematics 2007-05-23 Adam Hammett , Boris Pittel

Given a permutation pi, the application of prefix reversal f^(i) to pi reverses the order of the first i elements of pi. The problem of Sorting By Prefix Reversals (also known as pancake flipping), made famous by Gates and Papadimitriou…

Combinatorics · Mathematics 2007-05-23 Cor Hurkens , Leo van Iersel , Judith Keijsper , Steven Kelk , Leen Stougie , John Tromp

A sorting network is a shortest path from $12 \cdots n$ to $n \cdots 2 1$ in the Cayley graph of the symmetric group generated by adjacent transpositions. For a uniform random sorting network, we prove that in the global limit, particle…

Probability · Mathematics 2020-03-18 Duncan Dauvergne , Bálint Virág

This paper studies the properties of a new lower bound for the natural pseudo-distance. The natural pseudo-distance is a dissimilarity measure between shapes, where a shape is viewed as a topological space endowed with a real-valued…

Computational Geometry · Computer Science 2008-04-23 M. d'Amico , P. Frosini , C. Landi

A sequence $f\colon\{1,\dots,n\}\to\mathbb{R}$ contains a permutation $\pi$ of length $k$ if there exist $i_1<\dots<i_k$ such that, for all $x,y$, $f(i_x)<f(i_y)$ if and only if $\pi(x)<\pi(y)$; otherwise, $f$ is said to be $\pi$-free. In…

Data Structures and Algorithms · Computer Science 2017-10-31 Omri Ben-Eliezer , Clément L. Canonne

In this note we present an algorithm to obtain a uniform lower bound on Hausdorff dimension of the stationary measure of an affine iterated function scheme with similarities, the best known example of which is Bernoulli convolution. The…

Dynamical Systems · Mathematics 2022-01-19 Victor Kleptsyn , Mark Pollicott , Polina Vytnova

We obtain normal forms for symmetric and for reversible polynomial automorphisms (polynomial maps that have polynomial inverses) of the plane. Our normal forms are based on the generalized \Henon normal form of Friedland and Milnor. We…

Chaotic Dynamics · Physics 2010-06-22 A. Gomez , J. D. Meiss

Let $m, n$ be positive integers such that $m>1$ divides $n$. In this paper, we introduce a special class of piecewise-affine permutations of the finite set $[1, n]:=\{1, \ldots, n\}$ with the property that the reduction $\pmod m$ of $m$…

Number Theory · Mathematics 2020-03-13 Lucas Reis , Sávio Ribas

The tensor product of one code endowed with the Hamming metric and one endowed with the rank metric is analyzed. This gives a code which naturally inherits the sum-rank metric. Specializing to the product of a cyclic code and a skew-cyclic…

Information Theory · Computer Science 2021-06-01 Gianira N. Alfarano , F. J. Lobillo , Alessandro Neri , Antonia Wachter-Zeh

Normal approximations for descents and inversions of permutations of the set $\{1,2,...,n\}$ are well known. A number of sequences that occur in practice, such as the human genome and other genomes, contain many repeated elements. Motivated…

Probability · Mathematics 2014-08-28 Mark Conger , D. Viswanath

The elusive nature of gradient-based optimization in neural networks is tied to their loss landscape geometry, which is poorly understood. However recent work has brought solid evidence that there is essentially no loss barrier between the…

Machine Learning · Statistics 2023-10-17 Simone Rossi , Ankit Singh , Thomas Hannagan

This paper directly builds upon previous work where we introduced new reduced basis a posteriori error bounds for parametrized saddle point problems based on Brezzi's theory. We here sharpen these estimates for the special case of a…

Numerical Analysis · Mathematics 2012-11-06 Anna-Lena Gerner , Karen Veroy

The number of even 321-avoiding permutations of length n is equal to the number of odd ones if n is even, and exceeds it by the (n-1)/2th Catalan number otherwise. We present an involution that proves a refinement of this sign-balance…

Combinatorics · Mathematics 2007-05-23 Astrid Reifegerste

Signed distance transforms of sampled signals can be constructed better than the traditional exact signed distance transform. Such a transform is termed the high-order signed distance transform and is defined as satisfying three conditions:…

Image and Video Processing · Electrical Eng. & Systems 2021-10-27 Bryce A. Besler , Tannis D. Kemp , Nils D. Forkert , Steven K. Boyd

A notion of $t$-designs in the symmetric group on $n$ letters was introduced by Godsil in 1988. In particular $t$-transitive sets of permutations form a $t$-design. We derive special lower bounds for $t=1$ and $t=2$ by a power moment…

Combinatorics · Mathematics 2023-06-27 Minjia Shi , XiaoXiao Li , Patrick Solé

For a graph with edge ordering, a linear order on the edge set, we obtain a permutation of vertices by considering the edges as transpositions of endvertices. It is known from D\'enes' results that the permutation of a tree is a full cyclic…

Combinatorics · Mathematics 2023-05-31 Ryo Uchiumi
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