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We advance the state of the art in biomolecular interaction extraction with three contributions: (i) We show that deep, Abstract Meaning Representations (AMR) significantly improve the accuracy of a biomolecular interaction extraction…
Extracting medical history entities (MHEs) related to a patient's chief complaint (CC), history of present illness (HPI), and past, family, and social history (PFSH) helps structure free-text clinical notes into standardized EHRs,…
In this paper, we describe novel components for extracting clinically relevant information from medical conversations which will be available as Google APIs. We describe a transformer-based Recurrent Neural Network Transducer (RNN-T) model…
Automatically extracting useful information from electronic medical records along with conducting disease diagnoses is a promising task for both clinical decision support(CDS) and neural language processing(NLP). Most of the existing…
Named Entity Recognition (NER) System aims to extract the existing information into the following categories such as: Persons Name, Organization, Location, Date and Time, Term, Designation and Short forms. Now, it is considered to be…
Relation extraction (RE) aims to identify the semantic relations between named entities in text. Recent years have witnessed it raised to the document level, which requires complex reasoning with entities and mentions throughout an entire…
Named entity recognition (NER) is a fundamental part of extracting information from documents in biomedical applications. A notable advantage of NER is its consistency in extracting biomedical entities in a document context. Although…
Document-level models for information extraction tasks like slot-filling are flexible: they can be applied to settings where information is not necessarily localized in a single sentence. For example, key features of a diagnosis in a…
Contextual Relation Extraction (CRE) is mainly used for constructing a knowledge graph with a help of ontology. It performs various tasks such as semantic search, query answering, and textual entailment. Relation extraction identifies the…
Quantities are essential in documents to describe factual information. They are ubiquitous in application domains such as finance, business, medicine, and science in general. Compared to other information extraction approaches,…
Joint entity and relation extraction is the fundamental task of information extraction, consisting of two subtasks: named entity recognition and relation extraction. However, most existing joint extraction methods suffer from issues of…
Named entity recognition (NER) is an information extraction technique that aims to locate and classify named entities (e.g., organizations, locations,...) within a document into predefined categories. Correctly identifying these phrases…
Deep neural network models have recently achieved state-of-the-art performance gains in a variety of natural language processing (NLP) tasks (Young, Hazarika, Poria, & Cambria, 2017). However, these gains rely on the availability of large…
Extracting information from full documents is an important problem in many domains, but most previous work focus on identifying relationships within a sentence or a paragraph. It is challenging to create a large-scale information extraction…
The wide adoption of electronic health records (EHRs) has enabled a wide range of applications leveraging EHR data. However, the meaningful use of EHR data largely depends on our ability to efficiently extract and consolidate information…
Entity relationship extraction envisions the automatic generation of semantic data models from collections of text, by automatic recognition of entities, by association of entities to form relationships, and by classifying these instances…
Infectious diseases are a significant public health concern globally, and extracting relevant information from scientific literature can facilitate the development of effective prevention and treatment strategies. However, the large amount…
Relation extraction is a central task in natural language processing (NLP) and information retrieval (IR) research. We argue that an important type of relation not explored in NLP or IR research to date is that of an event being an argument…
Event extraction aims to recognize pre-defined event triggers and arguments from texts, which suffer from the lack of high-quality annotations. In most NLP applications, involving a large scale of synthetic training data is a practical and…
Patient summarization is essential for clinicians to provide coordinated care and practice effective communication. Automated summarization has the potential to save time, standardize notes, aid clinical decision making, and reduce medical…