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Light sheet fluorescence microscopy (LSFM) has transformed the way we visualize biological tissues in three dimensions, offering high-resolution imaging while minimizing photo-induced damage to the samples. Recent breakthroughs in…

Optics · Physics 2025-05-27 Alireza Tabatabaei Mashayekh , Jeremy Witzens

Image simulation remains under-exploited for the most widely used biological phase microscopy methods, because of difficulties in simulating partially coherent illumination. We describe an open-source toolbox, microlith…

Optics · Physics 2014-05-14 Shalin B. Mehta , Rudolf Oldenbourg

In this paper, we present a novel reconstruction method for diffuse optical spectroscopic imaging with a commonly used tissue model of optical absorption and scattering. It is based on linearization and group sparsity, which allows…

Numerical Analysis · Mathematics 2019-03-06 Habib Ammari , Bangti Jin , Wenlong Zhang

Binary features have been incrementally popular in the past few years due to their low memory footprints and the efficient computation of Hamming distance between binary descriptors. They have been shown with promising results on some real…

Computer Vision and Pattern Recognition · Computer Science 2016-02-16 Bin Fan , Qingqun Kong , Wei Sui , Zhiheng Wang , Xinchao Wang , Shiming Xiang , Chunhong Pan , Pascal Fua

Super-resolution fluorescence microscopy, with a resolution beyond the diffraction limit of light, has become an indispensable tool to directly visualize biological structures in living cells at a nanometer-scale resolution. Despite…

Computer Vision and Pattern Recognition · Computer Science 2018-09-05 Yu Li , Fan Xu , Fa Zhang , Pingyong Xu , Mingshu Zhang , Ming Fan , Lihua Li , Xin Gao , Renmin Han

Light-field microscopy (LFM) enables rapid volumetric imaging through single-frame acquisition and fast 3D reconstruction algorithms. The high speed and low phototoxicity of LFM make it highly suitable for real-time 3D fluorescence imaging,…

Optics · Physics 2025-02-24 Bohan Qu , Zhouyu Jin , You Zhou , Bo Xiong , Xun Cao

Hyperspectral neutron computed tomography enables 3D non-destructive imaging of the spectral characteristics of materials. In traditional hyperspectral reconstruction, the data for each neutron wavelength bin is reconstructed separately.…

Fourier ptychographic microscopy (FPM) is a recently proposed computational imaging technique with both high resolution and wide field-of-view. In current FP experimental setup, the dark-field images with high-angle illuminations are easily…

Computer Vision and Pattern Recognition · Computer Science 2017-12-19 Yan Zhang , An Pan , Ming Lei , Baoli Yao

The blind deconvolution problem amounts to reconstructing both a signal and a filter from the convolution of these two. It constitutes a prominent topic in mathematical and engineering literature. In this work, we analyze a sparse version…

Information Theory · Computer Science 2021-11-08 Axel Flinth , Ingo Roth , Benedikt Groß , Jens Eisert , Gerhard Wunder

Fringe projection profilometry-based 3-D reconstruction of objects with high reflectivity and low surface roughness remains a significant challenge. When measuring such glossy surfaces, specular reflection and indirect illumination often…

Computer Vision and Pattern Recognition · Computer Science 2026-02-06 Sanghoon Jeon , Gihyun Jung , Suhyeon Ka , Jae-Sang Hyun

We consider the problem of blind ptychography, that is the joint estimation of an unknown object and an illumination function from diffraction intensity measurements. In ptychography, diffraction measurements from neighboring regions of the…

Optimization and Control · Mathematics 2016-02-04 Stefano Marchesini , Hau-Tieng Wu

Reconstructing high-quality magnetic resonance images (MRI) from undersampled raw data is of great interest from both technical and clinical point of views. To this date, however, it is still a mathematically and computationally challenging…

Numerical Analysis · Mathematics 2021-09-01 T. Schmoderer , A. I Aviles-Rivero , V. Corona , N. Debroux , C-B. Schönlieb

In this paper we study the compressive sensing effects on 2D signals exhibiting sparsity in 2D DFT domain. A simple algorithm for reconstruction of randomly under-sampled data is proposed. It is based on the analytically determined…

Information Theory · Computer Science 2015-11-17 Srdjan Stankovic , Irena Orovic

Lensless cameras relax the design constraints of traditional cameras by shifting image formation from analog optics to digital post-processing. While new camera designs and applications can be enabled, lensless imaging is very sensitive to…

Image and Video Processing · Electrical Eng. & Systems 2025-01-22 Eric Bezzam , Stefan Peters , Martin Vetterli

Implicit representations are widely used for object reconstruction due to their efficiency and flexibility. In 2021, a novel structure named neural implicit map has been invented for incremental reconstruction. A neural implicit map…

Computer Vision and Pattern Recognition · Computer Science 2022-06-20 Yijun Yuan , Andreas Nuechter

Structured light illumination is an active 3-D scanning technique based on projecting/capturing a set of striped patterns and measuring the warping of the patterns as they reflect off a target object's surface. In the case of phase…

Computer Vision and Pattern Recognition · Computer Science 2017-06-09 Daniel L. Lau , Yu Zhang , Kai Liu

Maximum likelihood iteration is one of the most commonly used reconstruction algorithms in quantum tomography. The main appeal of the method is that it is easy to implement and that it converges reliably to a physically meaningful density…

Quantum Physics · Physics 2025-08-21 Florian Oberender

The structured illumination (SI) architecture can be adopted in a digital holographic (DH) microscope to enhance the spatial resolution. In this paper, we propose and demonstrate a compact and simple SI method in a self-referencing…

Optics · Physics 2022-02-18 S. Hossein S. Yaghoubi , Samira Ebrahimi , Masoomeh Dashtdar

Deep learning methods for accelerated MRI achieve state-of-the-art results but largely ignore additional speedups possible with noncartesian sampling trajectories. To address this gap, we created a generative diffusion model-based…

Artificial Intelligence · Computer Science 2024-10-02 Trevor J. Chan , Chamith S. Rajapakse

A novel phase retrieval algorithm for broadband hyperspectral phase imaging from noisy intensity observations is proposed. It utilizes advantages of the Fourier Transform spectroscopy in the self-referencing optical setup and provides,…

Image and Video Processing · Electrical Eng. & Systems 2020-06-03 Igor Shevkunov , Vladimir Katkovnik , Karen Egiazarian