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Related papers: Persistent Homology analysis of Phase Transitions

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In this work, we explore links between natural homology and persistent homology for the classification of directed spaces. The former is an algebraic invariant of directed spaces, a semantic model of concurrent programs. The latter was…

Algebraic Topology · Mathematics 2024-08-07 Cameron Calk , Eric Goubault , Philippe Malbos

We introduce several geometric notions, including the width of a homology class, to the theory of persistent homology. These ideas provide geometric interpretations of persistence diagrams. Indeed, we give quantitative and geometric…

Algebraic Topology · Mathematics 2022-12-27 Henry Adams , Baris Coskunuzer

Protein fold classification is a classic problem in structural biology and bioinformatics. We approach this problem using persistent homology. In particular, we use alpha shape filtrations to compare a topological representation of the data…

Biomolecules · Quantitative Biology 2021-08-23 W. Hamilton , J. E. Borgert , T. Hamelryck , J. S. Marron

Persistent homology is a fundamental tool in Topological Data Analysis. The associated algebraic structure is the persistence module, a sequence of vector spaces connected by linear maps. Persistence modules admit a complete and…

Algebraic Topology · Mathematics 2026-02-13 R. Gonzalez-Diaz , M. Soriano-Trigueros , A. Torras-Casas

In this paper we study the persistent homology associated with topological crackle generated by distributions with an unbounded support. Persistent homology is a topological and algebraic structure that tracks the creation and destruction…

Probability · Mathematics 2018-10-04 Takashi Owada , Omer Bobrowski

Topological data analysis has been recently applied to investigate stylistic signatures and trends in musical compositions. A useful tool in this area is Persistent Homology. In this paper, we develop a novel method to represent a weighted…

Sound · Computer Science 2022-04-26 Martín Mijangos , Alessandro Bravetti , Pablo Padilla

In the present work, we discuss how the functional form of thermodynamic observables can be deduced from the geometric properties of subsets of phase space. The geometric quantities taken into account are mainly extrinsic curvatures of the…

Statistical Mechanics · Physics 2020-05-01 Ghofrane Bel-Hadj-Aissa , Matteo Gori , Vittorio Penna , Giulio Pettini , Roberto Franzosi

The theory of zigzag persistence is a substantial extension of persistent homology, and its development has enabled the investigation of several unexplored avenues in the area of topological data analysis. In this paper, we discuss three…

Computational Geometry · Computer Science 2011-08-18 Andrew Tausz , Gunnar Carlsson

We address the question of the quantitative relationship between thermodynamic phase transitions and topological changes in the potential energy manifold analyzing two classes of one dimensional models, the Burkhardt solid-on-solid model…

Statistical Mechanics · Physics 2009-11-11 L. Angelani , G. Ruocco , F. Zamponi

Topological data analysis refers to approaches for systematically and reliably computing abstract ``shapes'' of complex data sets. There are various applications of topological data analysis in life and data sciences, with growing interest…

Mesoscale and Nanoscale Physics · Physics 2023-07-26 Daniel Leykam , Dimitris G. Angelakis

We introduce a consistent estimator for the homology (an algebraic structure representing connected components and cycles) of level sets of both density and regression functions. Our method is based on kernel estimation. We apply this…

Statistics Theory · Mathematics 2016-09-30 Omer Bobrowski , Sayan Mukherjee , Jonathan E. Taylor

In persistent homology analysis, interval modules play a central role in describing the birth and death of topological features across a filtration. In this work, we extend this setting, and propose the use of bipath persistent homology,…

Algebraic Topology · Mathematics 2024-04-04 Toshitaka Aoki , Emerson G. Escolar , Shunsuke Tada

We demonstrate the identification and classification of topological phase transitions from experimental data using Diffusion Maps: a nonlocal unsupervised machine learning method. We analyze experimental data from an optical system…

Optics · Physics 2021-04-09 Eran Lustig , Or Yair , Ronen Talmon , Mordechai Segev

Persistent Topology studies topological features of shapes by analyzing the lower level sets of suitable functions, called filtering functions, and encoding the arising information in a parameterized version of the Betti numbers, i.e. the…

Algebraic Topology · Mathematics 2010-05-05 Andrea Cerri , Patrizio Frosini

Persistent homology computes topological invariants from point cloud data. Recent work has focused on developing statistical methods for data analysis in this framework. We show that, in certain models, parametric inference can be performed…

Quantitative Methods · Quantitative Biology 2014-06-19 Kevin Emmett , Daniel Rosenbloom , Pablo Camara , Raul Rabadan

Surface roughness plays an important role in analyzing engineering surfaces. It quantifies the surface topography and can be used to determine whether the resulting surface finish is acceptable or not. Nevertheless, while several existing…

Signal Processing · Electrical Eng. & Systems 2021-10-20 Melih C. Yesilli , Firas A. Khasawneh

We use methods from topological data analysis to study the topological features of certain distributions of string vacua. Topological data analysis is a multi-scale approach used to analyze the topological features of a dataset by…

High Energy Physics - Theory · Physics 2016-04-20 Michele Cirafici

In the framework of a recently proposed topological approach to phase transitions, some sufficient conditions ensuring the presence of the spontaneous breaking of a Z_2 symmetry and of a symmetry-breaking phase transition are introduced and…

Statistical Mechanics · Physics 2007-05-23 Fabrizio Baroni , Lapo Casetti

In this paper, we propose Quasi Zigzag Persistent Homology (QZPH) as a framework for analyzing time-varying data by integrating multiparameter persistence and zigzag persistence. To this end, we introduce a stable topological invariant that…

Machine Learning · Computer Science 2026-01-21 Tamal K. Dey , Shreyas N. Samaga

Topological data analysis (TDA) is an area of data science that focuses on using invariants from algebraic topology to provide multiscale shape descriptors for geometric data sets such as point clouds. One of the most important such…

Computational Geometry · Computer Science 2023-06-21 David Loiseaux , Mathieu Carrière , Andrew J. Blumberg