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Solving linear systems of equations is a common problem that arises both on its own and as a subroutine in more complex problems: given a matrix A and a vector b, find a vector x such that Ax=b. We consider the case where one doesn't need…
The notion of the cover is a generalization of a period of a string, and there are linear time algorithms for finding the shortest cover. The seed is a more complicated generalization of periodicity, it is a cover of a superstring of a…
The articulation points of an undirected connected graphs are those vertices whose removal increases the number of connected components of the graph, i.e. the vertices whose removal disconnects the graph. However, not all the articulation…
In this paper, a new graph partitioning problem is introduced. The depth of each part is constrained, i.e., the node count in the longest path of the corresponding sub-graph is no more than a predetermined positive integer value p. An…
Finding the k-medianin a network involves identifying a subset of k vertices that minimize the total distance to all other vertices in a graph. This problem has been extensively studied in computer science, graph theory, operations…
We propose a new algorithm for finding the center of a graph, as well as the rank of each node in the hierarchy of distances to the center. In other words, our algorithm allows to partition the graph according to nodes distance to the…
The most commonly used method to tackle the graph partitioning problem in practice is the multilevel approach. During a coarsening phase, a multilevel graph partitioning algorithm reduces the graph size by iteratively contracting nodes and…
Finding an optimal assignment between two sets of objects is a fundamental problem arising in many applications, including the matching of `bag-of-words' representations in natural language processing and computer vision. Solving the…
In this work, we present the first linear time deterministic algorithm computing the 4-edge-connected components of an undirected graph. First, we show an algorithm listing all 3-edge-cuts in a given 3-edge-connected graph, and then we use…
Graph partitioning is a key fundamental problem in the area of big graph computation. Previous works do not consider the practical requirements when optimizing the big data analysis in real applications. In this paper, motivated by…
In a previous paper (q-alg/9501022) we suggested some algorithms that could be useful in solving the problem of knot classification. Here we continue this discussion by answering questions raised in that paper and by commenting on practical…
The class of $\mathsf{Ga}$lled-$\mathsf{T}$ree $\mathsf{Ex}$plainable ($\mathsf{GaTEx}$) graphs has recently been discovered as a natural generalization of cographs. Cographs are precisely those graphs that can be uniquely represented by a…
Graph searches and the corresponding search trees can exhibit important structural properties and are used in various graph algorithms. The problem of deciding whether a given spanning tree of a graph is a search tree of a particular search…
For a fixed property (graph class) ${\Pi}$, given a graph G and an integer k, the ${\Pi}$-deletion problem consists in deciding if we can turn $G$ into a graph with the property ${\Pi}$ by deleting at most $k$ edges. The ${\Pi}$-deletion…
We investigate algorithms for canonical labelling of site graphs, i.e. graphs in which edges bind vertices on sites with locally unique names. We first show that the problem of canonical labelling of site graphs reduces to the problem of…
We design new algorithms for approximating 2CSPs on graphs with bounded threshold rank, that is, whose normalized adjacency matrix has few eigenvalues larger than $\varepsilon$, smaller than $-\varepsilon$, or both. Unlike on worst-case…
In this paper we propose a new approach for developing a proof that P=NP. We propose to use a polynomial-time reduction of a NP-complete problem to Linear Programming. Earlier such attempts used polynomial-time transformation which is a…
Many complex questions in biology, physics, and mathematics can be mapped to the graph isomorphism problem and the closely related graph automorphism problem. In particular, these problems appear in the context of network visualization,…
In p-median location interdiction the aim is to find a subset of edges in a graph, such that the objective value of the p-median problem in the same graph without the selected edges is as large as possible. We prove that this problem is…
We propose a new graph-theoretic benchmark in this paper. The benchmark is developed to address shortcomings of an existing widely-used graph benchmark. We thoroughly studied a large number of traditional and contemporary graph algorithms…