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Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…

Populations and Evolution · Quantitative Biology 2015-01-30 Stephen J. Willson

We introduce a variant of the multiway cut that we call the min-max connected multiway cut. Given a graph $G=(V,E)$ and a set $\Gamma\subseteq V$ of $t$ terminals, partition $V$ into $t$ parts such that each part is connected and contains…

Data Structures and Algorithms · Computer Science 2026-05-05 Hans Raj Tiwary , Petr Kolman

We present a conceptually clear and algorithmically useful framework for parameterizing the costs of tensor network contraction. Our framework is completely general, applying to tensor networks with arbitrary bond dimensions, open legs, and…

Data Structures and Algorithms · Computer Science 2019-06-04 Bryan O'Gorman

A monotone drawing of a graph G is a straight-line drawing of G such that, for every pair of vertices u,w in G, there exists abpath P_{uw} in G that is monotone in some direction l_{uw}. (Namely, the order of the orthogonal projections of…

Data Structures and Algorithms · Computer Science 2016-04-14 Dayu He , Xin He

We revisit the issue of low-distortion embedding of metric spaces into the line, and more generally, into the shortest path metric of trees, from the parameterized complexity perspective.Let $M=M(G)$ be the shortest path metric of an edge…

Data Structures and Algorithms · Computer Science 2008-04-21 Michael Fellows , Fedor Fomin , Daniel Lokshtanov , Elena Losievskaja , Frances A. Rosamond , Saket Saurabh

In routing games, agents pick their routes through a network to minimize their own delay. A primary concern for the network designer in routing games is the average agent delay at equilibrium. A number of methods to control this average…

Computer Science and Game Theory · Computer Science 2013-11-12 Umang Bhaskar , Katrina Ligett , Leonard J. Schulman

We consider the NP-hard Tree Containment problem that has important applications in phylogenetics. The problem asks if a given leaf-labeled network contains a subdivision of a given leaf-labeled tree. We develop a fast algorithm for the…

Computational Complexity · Computer Science 2017-02-22 Mathias Weller

The main purpose of the paper is to develop an approach to evaluation or estimation of the spanning tree congestion of planar graphs. This approach is used to evaluate the spanning tree congestion of triangular grids.

Combinatorics · Mathematics 2010-09-07 M. I. Ostrovskii

Motivated by the increasing need for fast processing of large-scale graphs, we study a number of fundamental graph problems in a message-passing model for distributed computing, called $k$-machine model, where we have $k$ machines that…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-02-10 Khalid Hourani , Hartmut Klauck , William K. Moses , Danupon Nanongkai , Gopal Pandurangan , Peter Robinson , Michele Scquizzato

We investigate the computation of minimum-cost spanning trees satisfying prescribed vertex degree constraints: Given a graph $G$ and a constraint function $D$, we ask for a (minimum-cost) spanning tree $T$ such that for each vertex $v$, $T$…

Data Structures and Algorithms · Computer Science 2026-05-05 Narek Bojikian , Alexander Firbas , Robert Ganian , Hung P. Hoang , Krisztina Szilágyi

We present a new algorithm, which solves the problem of distributively finding a minimum diameter spanning tree of any (non-negatively) real-weighted graph $G = (V,E,\omega)$. As an intermediate step, we use a new, fast, linear-time…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-12-12 Marc Bui , Franck Butelle , Christian Lavault

We consider the classic problem of Network Reliability. A network is given together with a source vertex, one or more target vertices, and probabilities assigned to each of the edges. Each edge appears in the network with its associated…

Combinatorics · Mathematics 2019-03-20 Amir Kafshdar Goharshady , Fatemeh Mohammadi

We consider the minimum spanning tree (MST) problem under the restriction that for every vertex v, the edges of the tree that are adjacent to v satisfy a given family of constraints. A famous example thereof is the classical…

Data Structures and Algorithms · Computer Science 2011-07-28 Rico Zenklusen

We consider the communication complexity of finding an approximate maximum matching in a graph in a multi-party message-passing communication model. The maximum matching problem is one of the most fundamental graph combinatorial problems,…

Data Structures and Algorithms · Computer Science 2017-04-28 Zengfeng Huang , Bozidar Radunovic , Milan Vojnovic , Qin Zhang

The congested clique model is a message-passing model of distributed computation where the underlying communication network is the complete graph of $n$ nodes. In this paper we consider the situation where the joint input to the nodes is an…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-13 Pedro Montealegre , Sebastian Perez-Salazar , Ivan Rapaport , Ioan Todinca

In this paper, we propose the Ordered Median Tree Location Problem (OMT). The OMT is a single-allocation facility location problem where p facilities must be placed on a network connected by a non-directed tree. The objective is to minimize…

Discrete Mathematics · Computer Science 2025-02-11 Miguel A. Pozo , Justo Puerto , Alberto Torrejon

We consider an optimization problem posed by an actual newspaper company, which consists of computing a minimum length route for a delivery truck, such that the driver only stops at street crossings, each time delivering copies to all…

Data Structures and Algorithms · Computer Science 2019-01-29 Diego Delle Donne , Guido Tagliavini

We study spreading processes in temporal graphs, i. e., graphs whose connections change over time. These processes naturally model real-world phenomena such as infectious diseases or information flows. More precisely, we investigate how…

Data Structures and Algorithms · Computer Science 2021-07-21 Hendrik Molter , Malte Renken , Philipp Zschoche

Given a graph G = (V,E) with a root r in V, positive capacities {c(e)|e in E}, and non-negative lengths {l(e)|e in E}, the minimum-length (rooted) edge capacitated Steiner tree problem is to find a tree in G of minimum total length, rooted…

Discrete Mathematics · Computer Science 2016-07-26 Cedric Bentz , Marie-Christine Costa , Alain Hertz

We are witnessing increasing interests in the effective use of road networks. For example, to enable effective vehicle routing, weighted-graph models of transportation networks are used, where the weight of an edge captures some cost…

Machine Learning · Computer Science 2013-08-19 Bin Yang , Manohar Kaul , Christian S. Jensen