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In several fields such as statistics, machine learning, and bioinformatics, categorical variables are frequently represented as one-hot encoded vectors. For example, given 8 distinct values, we map each value to a byte where only a single…

Data Structures and Algorithms · Computer Science 2021-08-19 Marcus D. R. Klarqvist , Wojciech Muła , Daniel Lemire

Particle-in-cell merging algorithms aim to resample dynamically the six-dimensional phase space occupied by particles without distorting substantially the physical description of the system. Whereas various approaches have been proposed in…

Plasma Physics · Physics 2015-11-16 Marija Vranic , Thomas Grismayer , Joana L. Martins , Ricardo A. Fonseca , Luis O. Silva

Computational intensity and sequential nature of estimation techniques for Bayesian methods in statistics and machine learning, combined with their increasing applications for big data analytics, necessitate both the identification of…

Computation · Statistics 2015-03-02 Alireza S. Mahani , Mansour T. A. Sharabiani

This paper proposes a memory-efficient optimization strategy for the high-performance point cloud registration algorithm VANICP, enabling lightweight execution on embedded GPUs with constrained hardware resources. VANICP is a recently…

Computer Vision and Pattern Recognition · Computer Science 2025-12-05 Qiong Chang , Weimin Wang , Junpei Zhong , Jun Miyazaki

Graph processing requires irregular, fine-grained random access patterns incompatible with contemporary off-chip memory architecture, leading to inefficient data access. This inefficiency makes graph processing an extremely memory-bound…

Hardware Architecture · Computer Science 2025-03-11 Changmin Shin , Jaeyong Song , Hongsun Jang , Dogeun Kim , Jun Sung , Taehee Kwon , Jae Hyung Ju , Frank Liu , Yeonkyu Choi , Jinho Lee

This paper describes several new improvements of modular arithmetic and how to exploit them in order to gain more efficient implementations of commonly used algorithms, especially in cryptographic applications. We further present a new…

Cryptography and Security · Computer Science 2013-10-15 Wilke Trei

SSE (streaming SIMD extensions) and AVX (advanced vector extensions) are SIMD (single instruction multiple data streams) instruction sets supported by recent CPUs manufactured in Intel and AMD. This SIMD programming allows parallel…

High Energy Physics - Lattice · Physics 2013-11-05 Hwancheol Jeong , Sunghoon Kim , Weonjong Lee , Seok-Ho Myung

The speed of modern digital systems is severely limited by memory latency (the ``Memory Wall'' problem). Data exchange between Logic and Memory is also responsible for a large part of the system energy consumption. Logic--In--Memory (LiM)…

Hardware Architecture · Computer Science 2023-04-14 Fabrizio Ottati , Giovanna Turvani , Marco Vacca , Guido Masera

Processing-using-DRAM has been proposed for a limited set of basic operations (i.e., logic operations, addition). However, in order to enable the full adoption of processing-using-DRAM, it is necessary to provide support for more complex…

This paper presents a PVT-resilient, subthreshold SRAM-based computing-in-memory (CIM) macro tailored for energy-efficient spiking neural networks (SNNs). The macro integrates in-situ current sensors and distributed voltage regulators to…

We present a new scalable algorithm for short-range molecular dynamics simulations on distributed memory MIMD multicomputer based on a message-passing multi-cell approach. We have implemented the algorithm on the Connection Machine 5 (CM-5)…

comp-gas · Physics 2008-02-03 D. M. Beazley , P. S. Lomdahl

Conventional explicit electromagnetic particle-in-cell (PIC) algorithms do not conserve discrete energy exactly. Time-centered fully implicit PIC algorithms can conserve discrete energy exactly, but may introduce large dispersion errors in…

Computational Physics · Physics 2020-02-19 Guangye Chen , Luis Chacón , Lin Yin , Brian J. Albright , David J. Stark , Robert F. Bird

Factorization and multiplication of dense matrices and tensors are critical, yet extremely expensive pieces of the scientific toolbox. Careful use of low rank approximation can drastically reduce the computation and memory requirements of…

Performance · Computer Science 2023-11-15 Sameer Deshmukh , Rio Yokota , George Bosilca

Modern Artificial Intelligence (AI) applications are increasingly utilizing multi-tenant deep neural networks (DNNs), which lead to a significant rise in computing complexity and the need for computing parallelism. ReRAM-based…

Emerging Technologies · Computer Science 2024-08-12 Bojing Li , Duo Zhong , Xiang Chen , Chenchen Liu

State-of-the-art numerical simulations of laser plasma by means of the Particle-in-Cell method are often extremely computationally intensive. Therefore there is a growing need for development of approaches for efficient utilization of…

Spiking Neural Networks (SNNs) have emerged as a biologically inspired alternative to conventional deep networks, offering event-driven and energy-efficient computation. However, their throughput remains constrained by the serial update of…

Neural and Evolutionary Computing · Computer Science 2026-03-16 Hongyang Shang , Shuai Dong , Yahan Yang , Junyi Yang , Peng Zhou , Arindam Basu

Processing-in-memory (PIM) architectures bring computation closer to data, reducing the processor-memory transfer bottleneck in traditional processor-centric designs. Novel hardware solutions, such as UPMEM's in-memory processing…

Emerging Technologies · Computer Science 2026-04-10 Peterson Yuhala , Mpoki Mwaisela , Pascal Felber , Valerio Schiavoni

Particle-in-cell (PIC) is the most used algorithm to perform self-consistent tracking of intense charged particle beams. It is based on depositing macro-particles on a grid, and subsequently solving on it the Poisson equation. It is well…

Accelerator Physics · Physics 2016-01-27 Frederik Kesting , Giuliano Franchetti

Molecular Dynamics simulations can help scientists to gather valuable insights for physical processes on an atomic scale. This work explores various techniques for SIMD vectorization to improve the pairwise force calculation between…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-04 Luis Gall , Samuel James Newcome , Fabio Alexander Gratl , Markus Mühlhäußer , Manish Kumar Mishra , Hans-Joachim Bungartz

Recent development of structure-preserving geometric particle-in-cell (PIC) algorithms for Vlasov-Maxwell systems is summarized. With the arriving of 100 petaflop and exaflop computing power, it is now possible to carry out direct…

Plasma Physics · Physics 2019-06-26 Jianyuan Xiao , Hong Qin , Jian Liu
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