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Enhancement of the predictive power and robustness of nonlinear population dynamics models allows ecologists to make more reliable forecasts about species' long term survival. However, the limited availability of detailed ecological data,…

Pattern Formation and Solitons · Physics 2025-04-18 Indrajyoti Gaine , Malay Banerjee

We examine a spatially discrete reaction diffusion model based on the interactions that create a periodic pattern in the Drosophila eye imaginal disc. This model is capable of generating a regular hexagonal pattern of gene expression behind…

Molecular Networks · Quantitative Biology 2010-01-26 Matthew W. Pennington , David K. Lubensky

Biochemical networks play a crucial role in biological systems, implementing a broad range of vital functions. They normally operate at low copy numbers and in spatial settings, but this is often ignored and well-stirred conditions are…

Molecular Networks · Quantitative Biology 2017-05-25 Thomas R. Sokolowski , Pieter Rein ten Wolde

Non-uniform product (color) distribution in colorimetric paper-based sensors affects the accuracy and reliability of measurements. The underlying mechanisms responsible for this are still unclear. The coffee ring effect explains the…

Fluid Dynamics · Physics 2026-03-27 Kulkarni Namratha , S. Pushpavanam

We study the pattern dynamics in a reaction diffusion model of the activator--inhibitor type in the oscillatory regime. We consider finite systems with partially absorptive boundary conditions analizing examples in different geometries in…

Statistical Mechanics · Physics 2007-05-23 S. Bouzat , H. S. Wio

A one-dimensional model on a line of the length L is investigated, which involves particle diffusion as well as single particle annihilation. There are also creation and annihilation at the boundaries. The static and dynamical behaviors of…

Mathematical Physics · Physics 2014-03-17 Mohammad Khorrami , Amir Aghamohammadi

Coupling diffusion process of signaling molecules with nonlinear interactions of intracellular processes and cellular growth/transformation leads to a system of reaction-diffusion equations coupled with ordinary differential equations…

Analysis of PDEs · Mathematics 2013-11-08 Anna Marciniak-Czochra , Madoka Nakayama , Izumi Takagi

Piebaldism usually manifests as white areas of fur, hair or skin due to the absence of pigment-producing cells in those regions. The distribution of the white and colored zones does not follow the classical Turing patterns. Here we present…

Tissues and Organs · Quantitative Biology 2017-10-11 Michael Dougoud , Christian Mazza , Beat Schwaller , Laszlo Pecze

We consider a reaction-diffusion process with retardation. The particles, immersed in traps initially, remain inactive until another particle is annihilated spontaneously with a rate $\lambda$ at a certain point $\vec x$. In that case the…

Statistical Mechanics · Physics 2015-06-25 Michael Schulz , Steffen Trimper , Knud Zabrocki

Turing's theory of pattern formation has been used to describe the formation of self-organised periodic patterns in many biological, chemical and physical systems. However, the use of such models is hindered by our inability to predict, in…

Pattern Formation and Solitons · Physics 2021-02-03 Srikanth Subramanian , Sean M. Murray

Reaction-diffusion-advection media on semi-infinite domains are important in chemical, biological and ecological applications, yet remain a challenge for pattern formation theory. To demonstrate the rich emergence of nonlinear traveling…

Pattern Formation and Solitons · Physics 2018-08-16 Arik Yochelis

We investigate a reaction-diffusion-advection equation of the form $u_t-u_{xx}+\beta u_x=f(u)$ $(t>0,\,0<x<h(t))$ with mixed boundary condition at $x=0$ and a free boundary condition at $x=h(t)$. Such a model may be applied to describe the…

Analysis of PDEs · Mathematics 2015-08-17 Yonggang Zhao , Mingxin Wang

This paper investigates a reaction-advection-diffusion system modeling interspecific competition between two species over bounded domains. The kinetic terms are assumed to satisfy the Beddington-DeAngelis functional responses. We consider…

Analysis of PDEs · Mathematics 2016-03-29 Ling Jin , Qi Wang , Zengyan Zhang

There exists much uncertainty surrounding interstellar grain-surface chemistry. One of the major reaction mechanisms is grain-surface diffusion for which the the binding energy parameter for each species needs to be known. However, these…

Astrophysics of Galaxies · Physics 2022-06-01 Johannes Heyl , Jonathan Holdship , Serena Viti

Second initial boundary problem in narrow domains of width $\epsilon\ll 1$ for linear second order differential equations with nonlinear boundary conditions is considered in this paper. Using probabilistic methods we show that the solution…

Probability · Mathematics 2010-11-30 Mark Freidlin , Konstantinos Spiliopoulos

An asymptotic equation of motion for the pattern interface in the domain-forming reaction-diffusion systems is derived. The free boundary problem is reduced to the universal equation of non-local contour dynamics in two dimensions in the…

patt-sol · Physics 2009-10-30 C. B. Muratov

An investigation of the effect of surface diffusion in random deposition model is made by analytical methods and reasoning. For any given site, the extent to which a particle can diffuse is decided by the morphology in the immediate…

Soft Condensed Matter · Physics 2011-12-14 Baisakhi Mal , Subhankar Ray , J. Shamanna

We study a reaction-diffusion equation with an integral term describing nonlocal consumption of resources. We show that a homogeneous equilibrium can lose its stability resulting in appearance of stationary spatial structures. It is a new…

Analysis of PDEs · Mathematics 2007-05-23 Stephane Genieys , Vitaly Volpert , Pierre Auger

The replication and differentiation of spots in reaction diffusion equations are studied by extending the Gray-Scott model with self-replicating spots to include many degrees of freedom needed to model systems with many chemicals. By…

Pattern Formation and Solitons · Physics 2009-11-07 Hiroaki Takagi , Kunihiko Kaneko

Properties of reaction zones resulting from A+B -> C type reaction-diffusion processes are investigated by analytical and numerical methods. The reagents A and B are separated initially and, in addition, there is an initial macroscopic…

Other Condensed Matter · Physics 2009-11-11 Ioana Bena , Michel Droz , Kirsten Martens , Zoltan Racz
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