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In practice, many empirical networks, including co-authorship and collocation networks are unimodal projections of a bipartite data structure where one layer represents entities, the second layer consists of a number of sets representing…

Physics and Society · Physics 2016-07-07 Navid Dianati

Understanding the structural complexity and predictability of complex networks is a central challenge in network science. Although recent studies have revealed a relationship between compression-based entropy and link prediction…

Social and Information Networks · Computer Science 2025-10-14 Sebastián Brzovic , Cristóbal Rojas , Andrés Abeliuk

In the study of networked systems such as biological, technological, and social networks the available data are often uncertain. Rather than knowing the structure of a network exactly, we know the connections between nodes only with a…

Social and Information Networks · Computer Science 2016-01-20 Travis Martin , Brian Ball , M. E. J. Newman

One of the most important challenges in network science is to quantify the information encoded in complex network structures. Disentangling randomness from organizational principles is even more demanding when networks have a multiplex…

We address the practical problems of estimating the information relations that characterize large networks. Building on methods developed for analysis of the neural code, we show that reliable estimates of mutual information can be obtained…

Information Theory · Computer Science 2007-07-13 Noam Slonim , Gurinder S. Atwal , Gasper Tkacik , William Bialek

A critical task in systems biology is the identification of genes that interact to control cellular processes by transcriptional activation of a set of target genes. Many methods have been developed to use statistical correlations in…

Quantitative Methods · Quantitative Biology 2010-11-24 Adam A. Margolin , Kai Wang , Andrea Califano , Ilya Nemenman

Correlation clustering is a flexible framework for partitioning data based solely on pairwise similarity or dissimilarity information, without requiring the number of clusters as input. However, in many practical scenarios, these pairwise…

Machine Learning · Computer Science 2025-12-11 Linus Aronsson , Morteza Haghir Chehreghani

A principled approach to understand network structures is to formulate generative models. Given a collection of models, however, an outstanding key task is to determine which one provides a more accurate description of the network at hand,…

Machine Learning · Statistics 2018-06-29 Toni Vallès-Català , Tiago P. Peixoto , Roger Guimerà , Marta Sales-Pardo

Many real-world complex systems are best modeled by multiplex networks of interacting network layers. The multiplex network study is one of the newest and hottest themes in the statistical physics of complex networks. Pioneering studies…

Physics and Society · Physics 2016-10-31 Kyu-Min Lee , Byungjoon Min , Kwang-Il Goh

Estimating causal interactions in complex dynamical systems is an important problem encountered in many fields of current science. While a theoretical solution for detecting the causal interactions has been previously formulated in the…

Data Analysis, Statistics and Probability · Physics 2020-01-20 Jakub Kořenek , Jaroslav Hlinka

Overrepresentation of bidirectional connections in local cortical networks has been repeatedly reported and is in the focus of the ongoing discussion of non-random connectivity. Here we show in a brief mathematical analysis that in a…

Neurons and Cognition · Quantitative Biology 2016-12-14 Felix Z. Hoffmann , Jochen Triesch

Network analysis is currently used in a myriad of contexts: from identifying potential drug targets to predicting the spread of epidemics and designing vaccination strategies, and from finding friends to uncovering criminal activity.…

Data Analysis, Statistics and Probability · Physics 2010-04-28 R. Guimera , M. Sales-Pardo

We model a social network by a random graph whose nodes represent agents and links between two of them stand for a reciprocal interaction; each agent is also associated to a binary variable which represents a dichotomic opinion or…

Physics and Society · Physics 2009-11-06 Elena Agliari , Adriano Barra , Raffaella Burioni , Pierluigi Contucci

Several works have outlined the fact that the mobility in intermittently connected wireless networks is strongly governed by human behaviors as they are basically human-centered. It has been shown that the users' moves can be correlated and…

Networking and Internet Architecture · Computer Science 2016-11-17 Mohamed-Haykel Zayani , Vincent Gauthier , Djamal Zeghlache

Over the last decade, an enormous interest and activity in complex networks have been witnessed within the physics community. On the other hand, diffusion and its theory, have equipped the toolbox of the physicist for decades. In this…

Statistical Mechanics · Physics 2010-05-04 Ingve Simonsen

One of the goals of probabilistic inference is to decide whether an empirically observed distribution is compatible with a candidate Bayesian network. However, Bayesian networks with hidden variables give rise to highly non-trivial…

Machine Learning · Statistics 2014-10-14 R. Chaves , L. Luft , T. O. Maciel , D. Gross , D. Janzing , B. Schölkopf

Networks provide a powerful formalism for modeling complex systems by using a model of pairwise interactions. But much of the structure within these systems involves interactions that take place among more than two nodes at once; for…

Social and Information Networks · Computer Science 2018-12-13 Austin R. Benson , Rediet Abebe , Michael T. Schaub , Ali Jadbabaie , Jon Kleinberg

Networks represent relationships between entities in many complex systems, spanning from online social interactions to biological cell development and brain connectivity. In many cases, relationships between entities are unambiguously…

Social and Information Networks · Computer Science 2018-01-23 Ivan Brugere , Brian Gallagher , Tanya Y. Berger-Wolf

Spatial networks range from the brain networks, to transportation networks and infrastructures. Recently interacting and multiplex networks are attracting great attention because their dynamics and robustness cannot be understood without…

Physics and Society · Physics 2015-06-17 Arda Halu , Satyam Mukherjee , Ginestra Bianconi

During wakefulness and deep sleep brain states, cortical neural networks show a different behavior, with the second characterized by transients of high network activity. To investigate their impact on neuronal behavior, we apply a pairwise…

Neurons and Cognition · Quantitative Biology 2017-10-30 Trang-Anh Nghiem , Olivier Marre , Alain Destexhe , Ulisse Ferrari