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This paper reports on patterns exhibiting self-replication with spontaneous, inheritable mutations and exponential genetic drift in Neural Cellular Automata. Despite the models not being explicitly trained for mutation or inheritability,…

Neural and Evolutionary Computing · Computer Science 2023-05-23 Lana Sinapayen

Microbiological systems evolve to fulfill their tasks with maximal efficiency. The immune system is a remarkable example, where self-non self distinction is accomplished by means of molecular interaction between self proteins and antigens,…

Cell Behavior · Quantitative Biology 2013-08-26 Marcio Argollo de Menezes , Edgardo Brigatti , Veit Schwämmle

In this paper we study the statistical properties of a reversible cellular automaton in two out-of-equilibrium settings. In the first part we consider two instances of the initial value problem, corresponding to the inhomogeneous quench and…

Statistical Mechanics · Physics 2019-06-26 Marko Medenjak , Vladislav Popkov , Tomaž Prosen , Eric Ragoucy , Matthieu Vanicat

While there has been a keen interest in studying computation at the edge of chaos for dynamical systems undergoing a phase transition, this has come under question for cellular automata. We show that for continuously deformed cellular…

Cellular Automata and Lattice Gases · Physics 2019-04-15 E. Estevez-Rams , D. Estevez-Moya , K. Garcia-Medina , R. Lora-Serrano

Mathematical modelling and numerical simulations of interaction populations are crucial topics in systems biology. The interactions of ecological models may occur among individuals of the same species or individuals of different species.…

Quantitative Methods · Quantitative Biology 2017-09-04 Sarbaz H. A. Khoshnaw

We rigorously prove a form of disorder-resistance for a class of one-dimensional cellular automaton rules, including some that arise as boundary dynamics of two-dimensional solidification rules. Specifically, when started from a random…

Probability · Mathematics 2015-09-30 Janko Gravner , Alexander E. Holroyd

Accurately forecasting urban development and its environmental and climate impacts critically depends on realistic models of the spatial structure of the built environment, and of its dependence on key factors such as population and…

Machine Learning · Computer Science 2019-07-24 Adrian Albert , Jasleen Kaur , Emanuele Strano , Marta Gonzalez

Territorial behaviour is widespread in the animal kingdom, with creatures seeking to gain parts of space for their exclusive use. It arises through a complicated interplay of many different behavioural features. Extracting and quantifying…

Populations and Evolution · Quantitative Biology 2015-01-26 Jonathan R. Potts , Mark A. Lewis

We study the influence of spatially varying reaction rates on a spatial stochastic two-species Lotka-Volterra lattice model for predator-prey interactions using two-dimensional Monte Carlo simulations. The effects of this quenched…

Statistical Mechanics · Physics 2008-12-18 Ulrich Dobramysl , Uwe C. Tauber

We consider a spatial multi-type branching model in which individuals migrate in geographic space according to random walks and reproduce according to a state-dependent branching mechanism which can be sub-, super- or critical depending on…

Probability · Mathematics 2015-09-15 Andreas Greven , Anja Sturm , Anita Winter , Iljana Zähle

One dimensional stylized model taking into account spatial activity of firms with uniformly distributed customers is proposed. The spatial selling area of each firm is defined by a short interval cut out from selling space (large interval).…

General Finance · Quantitative Finance 2008-12-02 Zoltan Kuscsik , Denis Horvath

We present a spatial, individual-based predator-prey model in which dispersal is dependent on the local community. We determine species suitability to the biotic conditions of their local environment through a time and space varying fitness…

Populations and Evolution · Quantitative Biology 2008-07-21 Elise Filotas , Martin Grant , Lael Parrott , Per Arne Rikvold

Many natural systems are observed as point patterns in time, space, or space and time. Examples include plant and cellular systems, animal colonies, earthquakes, and wildfires. In practice the locations of the points are not always observed…

Empirical evidence suggesting that living systems might operate in the vicinity of critical points, at the borderline between order and disorder, has proliferated in recent years, with examples ranging from spontaneous brain activity to…

Statistical Mechanics · Physics 2014-07-25 Jorge Hidalgo , Jacopo Grilli , Samir Suweis , Miguel A. Munoz , Jayanth R. Banavar , Amos Maritan

Markov community models have been applied to sessile organisms because such models facilitate estimation of transition probabilities by tracking species occupancy at many fixed observation points over multiple periods of time. Estimation of…

Applications · Statistics 2017-06-12 Keiichi Fukaya , J. Andrew Royle , Takehiro Okuda , Masahiro Nakaoka , Takashi Noda

We use extensive Monte Carlo transfer matrix calculations on infinite strips of widths $L$ up to 30 lattice spacing and a finite-size scaling analysis to obtain critical exponents and conformal anomaly number $c$ for the two-dimensional…

Condensed Matter · Physics 2009-10-28 M. P. Nightingale , E. Granato , J. M. Kosterlitz

The work reported in this paper is motivated towards the development of a mathematical model for swarm systems based on macroscopic primitives. A pattern formation and transformation model is proposed. The pattern transformation model…

Robotics · Computer Science 2013-10-10 Blesson Varghese , Gerard McKee

Artificial ecosystems provide an additional experimental tool to support laboratory work, field work, and theoretical development in competitive exclusion research. A novel application of a spatiotemporal agent based model is presented…

Populations and Evolution · Quantitative Biology 2023-06-01 John C. Stevenson

Multivariate spatial disease mapping has become a pivotal part of everyday practice in social epidemiology. Despite the existence of several specifications for the relation between different outcomes, there is still a need for a new…

Applications · Statistics 2024-10-30 P. Escobar-Hernández , A. López-Quílez , F. Palmí-Perales , M. Marco

Dynamic properties of a one-dimensional probabilistic cellular automaton are studied by monte-carlo simulation near a critical point which marks a second-order phase transition from a active state to a effectively unique absorbing state.…

Statistical Mechanics · Physics 2009-10-30 Pratip Bhattacharyya