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Related papers: Subgraph Similarity Search in Large Graphs

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Subgraph queries also known as subgraph isomorphism search is a fundamental problem in querying graph-like structured data. It consists to enumerate the subgraphs of a data graph that match a query graph. This problem arises in many…

Databases · Computer Science 2018-07-11 C. Nabti , T. Mecharnia , S. E. Boukhetta , H. Seba , K. Amrouche

In recent years, kernel methods are widespread in tasks of similarity measuring. Specifically, graph kernels are widely used in fields of bioinformatics, chemistry and financial data analysis. However, existing methods, especially entropy…

Machine Learning · Computer Science 2023-03-27 Chengyu Sun , Xing Ai , Zhihong Zhang , Edwin R Hancock

We propose graph kernels based on subgraph matchings, i.e. structure-preserving bijections between subgraphs. While recently proposed kernels based on common subgraphs (Wale et al., 2008; Shervashidze et al., 2009) in general can not be…

Machine Learning · Computer Science 2012-07-03 Nils Kriege , Petra Mutzel

This paper provides a new similarity detection algorithm. Given an input set of multi-dimensional data points, where each data point is assumed to be multi-dimensional, and an additional reference data point for similarity finding, the…

Artificial Intelligence · Computer Science 2017-07-12 Yariv Aizenbud , Amir Averbuch , Gil Shabat , Guy Ziv

Edge-labeled graphs are widely used to describe relationships between entities in a database. Given a query subgraph that represents an example of what the user is searching for, we study the problem of efficiently searching for similar…

Databases · Computer Science 2020-05-12 Zhaoyang Shao , Davood Rafiei , Themis Palpanas

Graphs provide a natural way to represent data by encoding information about objects and the relationships between them. With the ever-increasing amount of data collected and generated, locating specific patterns of relationships between…

Data Structures and Algorithms · Computer Science 2026-04-28 Tatyana Benko , Rebecca Jones , Lucas Tate

Embedding networks into a fixed dimensional feature space, while preserving its essential structural properties is a fundamental task in graph analytics. These feature vectors (graph descriptors) are used to measure the pairwise similarity…

Databases · Computer Science 2020-02-20 Zohair Raza Hassan , Mudassir Shabbir , Imdadullah Khan , Waseem Abbas

Graph kernels are often used in bioinformatics and network applications to measure the similarity between graphs; therefore, they may be used to construct efficient graph classifiers. Many graph kernels have been developed thus far, but to…

Quantum Physics · Physics 2022-11-01 Kaito Kishi , Takahiko Satoh , Rudy Raymond , Naoki Yamamoto , Yasubumi Sakakibara

Subgraph matching is the problem of finding all the occurrences of a small graph, called the query, in a larger graph, called the target. Although the problem has been widely studied in simple graphs, few solutions have been proposed for…

Many studies have been conducted on seeking the efficient solution for subgraph similarity search over certain (deterministic) graphs due to its wide application in many fields, including bioinformatics, social network analysis, and…

Databases · Computer Science 2012-05-31 Ye Yuan , Guoren Wang , Lei Chen , Haixun Wang

The rise of graph analytic systems has created a need for ways to measure and compare the capabilities of these systems. Graph analytics present unique scalability difficulties. The machine learning, high performance computing, and visual…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-07 Siddharth Samsi , Vijay Gadepally , Michael Hurley , Michael Jones , Edward Kao , Sanjeev Mohindra , Paul Monticciolo , Albert Reuther , Steven Smith , William Song , Diane Staheli , Jeremy Kepner

Subgraph matching is the problem of determining the presence and location(s) of a given query graph in a large target graph. Despite being an NP-complete problem, the subgraph matching problem is crucial in domains ranging from network…

Machine Learning · Computer Science 2020-10-28 Rex , Ying , Zhaoyu Lou , Jiaxuan You , Chengtao Wen , Arquimedes Canedo , Jure Leskovec

Finding dense substructures in a graph is a fundamental graph mining operation, with applications in bioinformatics, social networks, and visualization to name a few. Yet most standard formulations of this problem (like clique, quasiclique,…

Social and Information Networks · Computer Science 2015-03-10 Ahmet Erdem Sariyuce , C. Seshadhri , Ali Pinar , Umit V. Catalyurek

Measuring similarity between complex objects is a fundamental task in many scientific fields. When objects are represented as graphs, graph similarity/distance measures offer a powerful framework for quantifying structural resemblance.…

Combinatorics · Mathematics 2025-09-30 Matthias Dehmer , Izudin Redžepović , Niko Tratnik , Petra Žigert Pleteršek

The problem of finding dense components of a graph is a widely explored area in data analysis, with diverse applications in fields and branches of study including community mining, spam detection, computer security and bioinformatics. This…

Information Retrieval · Computer Science 2021-03-02 B. D. M. De Zoysa , Y. A. M. M. A. Ali , M. D. I. Maduranga , Indika Perera , Saliya Ekanayake , Anil Vullikanti

Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…

Data Structures and Algorithms · Computer Science 2021-12-30 Pedro Ribeiro , Pedro Paredes , Miguel E. P. Silva , David Aparicio , Fernando Silva

In this paper, we propose the novel problem of Subteam Replacement: given a team of people embedded in a social network to complete a certain task, and a subset of members - subteam - in this team which have become unavailable, find another…

Social and Information Networks · Computer Science 2021-11-12 Zhaoheng Li , Xinyu Pi , Mingyuan Wu , Hanghang Tong

Graph similarity search is among the most important graph-based applications, e.g. finding the chemical compounds that are most similar to a query compound. Graph similarity computation, such as Graph Edit Distance (GED) and Maximum Common…

Machine Learning · Computer Science 2020-03-03 Yunsheng Bai , Hao Ding , Song Bian , Ting Chen , Yizhou Sun , Wei Wang

How can we find the right graph for semi-supervised learning? In real world applications, the choice of which edges to use for computation is the first step in any graph learning process. Interestingly, there are often many types of…

Machine Learning · Computer Science 2020-07-24 Jonathan Halcrow , Alexandru Moşoi , Sam Ruth , Bryan Perozzi

The ability to handle large scale graph data is crucial to an increasing number of applications. Much work has been dedicated to supporting basic graph operations such as subgraph matching, reachability, regular expression matching, etc. In…

Databases · Computer Science 2012-05-31 Zhao Sun , Hongzhi Wang , Haixun Wang , Bin Shao , Jianzhong Li
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