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Causal terminology is often introduced in the interpretation of encoding and decoding models trained on neuroimaging data. In this article, we investigate which causal statements are warranted and which ones are not supported by empirical…

Encoding and decoding models are widely used in systems, cognitive, and computational neuroscience to make sense of brain-activity data. However, the interpretation of their results requires care. Decoding models can help reveal whether…

Neurons and Cognition · Quantitative Biology 2019-04-29 Nikolaus Kriegeskorte , Pamela K. Douglas

There are two major questions that neuroimaging studies attempt to answer: First, how are sensory stimuli represented in the brain (which we term the stimulus-based setting)? And, second, how does the brain generate cognition (termed the…

Neurons and Cognition · Quantitative Biology 2017-05-01 Sebastian Weichwald , Moritz Grosse-Wentrup

The ability to learn and act in novel situations is still a prerogative of animate intelligence, as current machine learning methods mostly fail when moving beyond the standard i.i.d. setting. What is the reason for this discrepancy? Most…

Machine Learning · Computer Science 2018-12-04 Niki Kilbertus , Giambattista Parascandolo , Bernhard Schölkopf

In medical imaging, particularly in early disease detection and prognosis tasks, discerning the rationale behind an AI model's predictions is crucial for evaluating the reliability of its decisions. Conventional explanation methods face…

Computer Vision and Pattern Recognition · Computer Science 2024-06-28 Yingying Fang , Zihao Jin , Xiaodan Xing , Simon Walsh , Guang Yang

Evaluating hypothetical statements about how the world would be had a different course of action been taken is arguably one key capability expected from modern AI systems. Counterfactual reasoning underpins discussions in fairness, the…

Machine Learning · Computer Science 2022-10-04 Kevin Xia , Yushu Pan , Elias Bareinboim

Among the most impressive recent applications of neural decoding is the visual representation decoding, where the category of an object that a subject either sees or imagines is inferred by observing his/her brain activity. Even though…

Neural and Evolutionary Computing · Computer Science 2018-11-06 Angeliki Papadimitriou , Nikolaos Passalis , Anastasios Tefas

What is the difference of a prediction that is made with a causal model and a non-causal model? Suppose we intervene on the predictor variables or change the whole environment. The predictions from a causal model will in general work as…

Methodology · Statistics 2024-04-27 Jonas Peters , Peter Bühlmann , Nicolai Meinshausen

Deep neural networks are complex and opaque. As they enter application in a variety of important and safety critical domains, users seek methods to explain their output predictions. We develop an approach to explaining deep neural networks…

Artificial Intelligence · Computer Science 2018-02-05 Michael Harradon , Jeff Druce , Brian Ruttenberg

In this paper we present a comprehensive view of prominent causal discovery algorithms, categorized into two main categories (1) assuming acyclic and no latent variables, and (2) allowing both cycles and latent variables, along with…

Artificial Intelligence · Computer Science 2017-09-13 Karamjit Singh , Garima Gupta , Vartika Tewari , Gautam Shroff

A popular theory of perceptual processing holds that the brain learns both a generative model of the world and a paired recognition model using variational Bayesian inference. Most hypotheses of how the brain might learn these models assume…

Neurons and Cognition · Quantitative Biology 2021-06-01 Ari S. Benjamin , Konrad P. Kording

Deep learning architectures based on convolutional neural networks tend to rely on continuous, smooth features. While this characteristics provides significant robustness and proves useful in many real-world tasks, it is strikingly…

Computer Vision and Pattern Recognition · Computer Science 2026-03-10 Zuzanna Buchnajzer , Kacper Dobek , Stanisław Hapke , Daniel Jankowski , Krzysztof Krawiec

Understanding brain function, constructing computational models and engineering neural prosthetics require assessing two problems, namely encoding and decoding, but their relation remains controversial. For decades, the encoding problem has…

Neurons and Cognition · Quantitative Biology 2017-01-16 Hugo Gabriel Eyherabide

Understanding the predictions made by deep learning models remains a central challenge, especially in high-stakes applications. A promising approach is to equip models with the ability to answer counterfactual questions -- hypothetical…

Machine Learning · Computer Science 2025-10-28 Inwoo Hwang , Yushu Pan , Elias Bareinboim

Graphical models can represent a multivariate distribution in a convenient and accessible form as a graph. Causal models can be viewed as a special class of graphical models that not only represent the distribution of the observed system…

Methodology · Statistics 2017-06-29 Christina Heinze-Deml , Marloes H. Maathuis , Nicolai Meinshausen

Encoding models are used for predicting brain activity in response to sensory stimuli with the objective of elucidating how sensory information is represented in the brain. Encoding models typically comprise a nonlinear transformation of…

Neurons and Cognition · Quantitative Biology 2017-03-13 Umut Güçlü , Marcel A. J. van Gerven

Neural networks trained to classify images do so by identifying features that allow them to distinguish between classes. These sets of features are either causal or context dependent. Grad-CAM is a popular method of visualizing both sets of…

Computer Vision and Pattern Recognition · Computer Science 2021-03-24 Mohit Prabhushankar , Ghassan AlRegib

Neural network (connectionist) models are designed to encode image features and provide the building blocks for object and shape recognition. These models generally call for: a) initial diffuse connections from one neuron population to…

Neurons and Cognition · Quantitative Biology 2018-01-09 Ernest Greene

Neural encoding and decoding, which aim to characterize the relationship between stimuli and brain activities, have emerged as an important area in cognitive neuroscience. Traditional encoding models, which focus on feature extraction and…

Neurons and Cognition · Quantitative Biology 2019-08-26 Hao Wu , Ziyu Zhu , Jiayi Wang , Nanning Zheng , Badong Chen

Understanding causal relationships among features is fundamental for explaining machine learning model decisions. However, traditional causal discovery methods face challenges with categorical variables due to numerical instability in…

Artificial Intelligence · Computer Science 2026-01-30 Henry Salgado , Meagan R. Kendall , Martine Ceberio
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