Related papers: Massive Multi-Omics Microbiome Database (M3DB): A …
As sequencing technologies become more affordable and genomic databases expand continuously, the reuse of publicly available sequencing data emerges as a powerful strategy for studying microbial pathogens. Indeed, raw sequencing reads…
Cloud storage is a widely utilized service for both personal and enterprise demands. However, despite its advantages, many potential users with enormous amounts of sensitive data (big data) refrain from fully utilizing the cloud storage…
The demanding requirements of the new Big Data intensive era raised the need for flexible storage systems capable of handling huge volumes of unstructured data and of tackling the challenges that traditional databases were facing. NoSQL…
Background: The secure management of sensitive clinical data, particularly human genomics data, has become a critical requirement in modern biomedical research. Although the necessary software and algorithms are readily available, their use…
Microbes are everywhere, including in and on our bodies, and have been shown to play key roles in a variety of prevalent human diseases. Consequently, there has been intense interest in the design of bacteriotherapies or "bugs as drugs,"…
The reconstruction of microbial genomes from large metagenomic datasets is a critical procedure for finding uncultivated microbial populations and defining their microbial functional roles. To achieve that, we need to perform metagenomic…
Existing data storage systems offer a wide range of functionalities to accommodate an equally diverse range of applications. However, new classes of applications have emerged, e.g., blockchain and collaborative analytics, featuring data…
In many key applications of metabolomics, such as toxicology or nutrigenomics, it is of interest to profile and detect changes in metabolic processes, usually represented in the form of pathways. As an alternative, a broader point of view…
The data warehousing and OLAP technologies are now moving onto handling complex data that mostly originate from the Web. However, intagrating such data into a decision-support process requires their representation under a form processable…
The advances of next-generation sequencing technology have accelerated study of the microbiome and stimulated the high throughput profiling of metagenomes. The large volume of sequenced data has encouraged the rise of various studies for…
Large-scale clinical databases offer opportunities for medical research, but their complexity creates barriers to effective use. The Medical Information Mart for Intensive Care (MIMIC-IV), one of the world's largest open-source electronic…
Most of the work on query evaluation in probabilistic databases has focused on the simple tuple-independent data model, where tuples are independent random events. Several efficient query evaluation techniques exists in this setting, such…
Modern applications demand high performance and cost efficient database management systems (DBMSs). Their workloads may be diverse, ranging from online transaction processing to analytics and decision support. The cloud infrastructure…
Metagenomics offers a way to analyze biotopes at the genomic level and to reach functional and taxonomical conclusions. The bio-analyzes of large metagenomic projects face critical limitations: complex metagenomes cannot be assembled and…
The amount of data generated and stored in cloud systems has been increasing exponentially. The examples of data include user generated data, machine generated data as well as data crawled from the Internet. There have been several…
The discovery of new materials as well as the determination of a vast set of materials properties for science and technology is a fast growing field of research, with contributions from many groups worldwide. Materials data from individual…
polyDB is a database for discrete geometric objects. The database is accessible via web and an interface from the software package polymake. It contains various datasets from the area of lattice polytopes, combinatorial polytopes, matroids…
The human microbiome plays an important role in human health and disease status. Next generating sequencing technologies allow for quantifying the composition of the human microbiome. Clustering these microbiome data can provide valuable…
Large organizations today are being served by different types of data processing and informations systems, ranging from the operational (OLTP) systems, data warehouse systems, to data mining and business intelligence applications. It is…
A large volume of remote sensing (RS) data has been generated with the deployment of satellite technologies. The data facilitates research in ecological monitoring, land management and desertification, etc. The characteristics of RS data…