Related papers: An In-place Framework for Exact and Approximate Sh…
Given strings $P$ of length $m$ and $T$ of length $n$ over an alphabet of size $\sigma$, the string matching with $k$-mismatches problem is to find the positions of all the substrings in $T$ that are at Hamming distance at most $k$ from…
This paper is concerned with practical implementations of approximate string dictionaries that allow edit errors. In this problem, we have as input a dictionary $D$ of $d$ strings of total length $n$ over an alphabet of size $\sigma$. Given…
A well-known fact in the field of lossless text compression is that high-order entropy is a weak model when the input contains long repetitions. Motivated by this, decades of research have generated myriads of so-called dictionary…
The $k$-mappability problem has two integers parameters $m$ and $k$. For every subword of size $m$ in a text $S$, we wish to report the number of indices in $S$ in which the word occurs with at most $k$ mismatches. The problem was lately…
This paper considers a movement minimization problem for mobile sensors. Given a set of $n$ point targets, the $k$-Sink Minimum Movement Target Coverage Problem is to schedule mobile sensors, initially located at $k$ base stations, to cover…
The string indexing problem is a fundamental computational problem with numerous applications, including information retrieval and bioinformatics. It aims to efficiently solve the pattern matching problem: given a text T of length n for…
The Longest Common Subsequence (LCS) of two strings is a fundamental string similarity measure with a classical dynamic programming solution taking quadratic time. Despite significant efforts, little progress was made in improving the…
Grammar based compression, where one replaces a long string by a small context-free grammar that generates the string, is a simple and powerful paradigm that captures many popular compression schemes. In this paper, we present a novel…
In this paper we study constrained subspace approximation problem. Given a set of $n$ points $\{a_1,\ldots,a_n\}$ in $\mathbb{R}^d$, the goal of the {\em subspace approximation} problem is to find a $k$ dimensional subspace that best…
We study algorithms for estimating the size of maximum matching. This problem has been subject to extensive research. For $n$-vertex graphs, Bhattacharya, Kiss, and Saranurak [FOCS'23] (BKS) showed that an estimate that is within…
We present a framework that provides deterministic consistency algorithms for given memory models. Such an algorithm checks whether the executions of a shared-memory concurrent program are consistent under the axioms defined by a model. For…
The Densest $k$-Subgraph (D$k$S) problem, and its corresponding minimization problem Smallest $p$-Edge Subgraph (S$p$ES), have come to play a central role in approximation algorithms. This is due both to their practical importance, and…
Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. Sampled string…
A property $\Pi$ on a finite set $U$ is \emph{monotone} if for every $X \subseteq U$ satisfying $\Pi$, every superset $Y \subseteq U$ of $X$ also satisfies $\Pi$. Many combinatorial properties can be seen as monotone properties. The problem…
We consider the popular $k$-means problem in $d$-dimensional Euclidean space. Recently Friggstad, Rezapour, Salavatipour [FOCS'16] and Cohen-Addad, Klein, Mathieu [FOCS'16] showed that the standard local search algorithm yields a…
We formulate and optimally solve a new generalized Set Similarity Search problem, which assumes the size of the database and query sets are known in advance. By creating polylog copies of our data-structure, we optimally solve any symmetric…
For a set of $n$ points in $\Re^d$, and parameters $k$ and $\eps$, we present a data structure that answers $(1+\eps,k)$-\ANN queries in logarithmic time. Surprisingly, the space used by the data-structure is $\Otilde (n /k)$; that is, the…
String consensus problems aim at finding a string that minimizes some given distance with respect to an input set of strings. In particular, in the Closest string problem, we are given a set of strings of equal length and a radius $d$. The…
We derive, similar to Lau and Riha, a matrix formulation of a general best approximation theorem of Singer for the special case of spectral approximations of a given matrix from a given subspace. Using our matrix formulation we describe the…
The Universal Similarity Metric (USM) has been demonstrated to give practically useful measures of "similarity" between sequence data. Here we have used the USM as an alternative distance metric in a K-Nearest Neighbours (K-NN) learner to…