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Why are living systems complex? Why does the biosphere contain living beings with complexity features beyond those of the simplest replicators? What kind of evolutionary pressures result in more complex life forms? These are key questions…

Populations and Evolution · Quantitative Biology 2023-11-13 Seoane LF , Solé R

It is prevalent in contemporary AI and robotics to separately postulate a brain modeled by neural networks and employ it to learn intelligent and adaptive behavior. While this method has worked very well for many types of tasks, it isn't…

Robotics · Computer Science 2024-07-24 Alican Mertan , Nick Cheney

Background: Many biological systems are modeled qualitatively with discrete models, such as probabilistic Boolean networks, logical models, Petri nets, and agent-based models, with the goal to gain a better understanding of the system. The…

In recent years, research on Physarum polycephalum has become more popular after Nakagaki et al. (2000) performed their famous experiment showing that Physarum was able to find the shortest route through a maze. Subsequent researches have…

Artificial Intelligence · Computer Science 2021-05-11 Abubakr Awad , Wei Pang , David Lusseau , George M. Coghill

This paper proposes a simple model to capture the complexity of multi-layer systems where their constituent layers affect, are affected by, each other. The physical layer is a circuit composed by a power source and resistors in parallel.…

Multiagent Systems · Computer Science 2016-02-09 Florian Kühnlenz , Pedro H. J. Nardelli

The formation of groups of interacting individuals improves performance and fitness in many decentralised systems, from micro-organisms to social insects, from robotic swarms to artificial intelligence algorithms. Often, group formation and…

Soft Condensed Matter · Physics 2023-11-14 Cristóvão S. Dias , Manish Trivedi , Giovanni Volpe , Nuno A. M. Araújo , Giorgio Volpe

Chemotaxis can be defined as an innate behavioural response by an organism to a directional stimulus, in which bacteria, and other single-cell or multicellular organisms direct their movements according to certain chemicals in their…

Multiagent Systems · Computer Science 2016-11-18 Vitorino Ramos , C. M. Fernandes , A. C. Rosa , A. Abraham

Behaviour change lies at the heart of many observable collective phenomena such as the transmission and control of infectious diseases, adoption of public health policies, and migration of animals to new habitats. Representing the process…

Quantitative Methods · Quantitative Biology 2025-09-03 Roben Delos Reyes , Hugo Lyons Keenan , Cameron Zachreson

The German motorway, or 'autobahn', is characterised by long traditions, meticulous state planning, historical misbalance between West and East Germany's transport networks, and highest increase in traffic in modern Europe, posing a need…

Adaptation and Self-Organizing Systems · Physics 2012-09-18 Andrew Adamatzky , Theresa Schubert

A deep understanding of the dynamics of the human nervous system requires the simultaneous study of multiple spatiotemporal scales from the level of neurotransmitters up to the level of human cultures. This is likely impossible for…

Neurons and Cognition · Quantitative Biology 2023-01-24 William Sulis

Understanding the mechanisms behind emergent behaviors in multi-agent systems is critical for advancing fields such as swarm robotics and artificial intelligence. In this study, we investigate how neural networks evolve to control agents'…

Adaptation and Self-Organizing Systems · Physics 2024-10-28 Guilherme S. Y. Giardini , John F. Hardy , Carlo R. da Cunha

Wounding is a severe impairment of function, especially for an exposed organism like the network-forming true slime mould Physarum polycephalum. The tubular network making up the organism's body plan is entirely interconnected and shares a…

Quantitative Methods · Quantitative Biology 2017-10-25 Felix Bäuerle , Mirna Kramar , Karen Alim

In a complex system, the individual components are neither so tightly coupled or correlated that they can all be treated as a single unit, nor so uncorrelated that they can be approximated as independent entities. Instead, patterns of…

Populations and Evolution · Quantitative Biology 2015-09-15 Blake C. Stacey

Neurobiological theories of spatial cognition developed with respect to recording data from relatively small and/or simplistic environments compared to animals' natural habitats. It has been unclear how to extend theoretical models to large…

Multiagent Systems · Computer Science 2021-05-18 Joseph D. Monaco , Grace M. Hwang , Kevin M. Schultz , Kechen Zhang

Living organisms process information to interact and adapt to their changing environment with the goal of finding food, mates or averting hazards. The structure of their niche has profound repercussions by both selecting their internal…

Physics and Society · Physics 2017-06-07 Hannes Hornischer , Stephan Herminghaus , Marco G. Mazza

Systems of active particles can show a large variety of collective behavior. In theory, two aspects determine the collective behavior: the model at the particle level and the parameter regime. While many studies consider a single model and…

Soft Condensed Matter · Physics 2025-11-17 Colin-Marius Koch , Michael Wilczek

Large Language Model (LLM) agents struggle with long-horizon software engineering tasks due to "Context Bloat." As interaction history grows, computational costs explode, latency increases, and reasoning capabilities degrade due to…

Artificial Intelligence · Computer Science 2026-01-13 Nikhil Verma

Self-organization of heterogeneous particle swarms is rich in its dynamics but hard to design in a traditional top-down manner, especially when many types of kinetically distinct particles are involved. In this chapter, we discuss how we…

Neural and Evolutionary Computing · Computer Science 2017-05-29 Hiroki Sayama

In this demo, we present a novel technique for approximating topologically optimal scaffoldings for 3D printed objects using a Monte Carlo algorithm based on the foraging behavior of the Physarum polycephalum slime mold. As a case study, we…

Graphics · Computer Science 2022-12-23 Drew Ehrlich , Milad Hakimshafaei , Oskar Elek

Myxococcus xanthus cells self-organize into aligned groups, clusters, at various stages of their lifecycle. Formation of these clusters is crucial for the complex dynamic multi-cellular behavior of these bacteria. However, the mechanism…

Biological Physics · Physics 2016-02-17 Rajesh Balagam , Oleg A. Igoshin