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We give a linear-time algorithm that checks for isomorphism between two 0-1 matrices that obey the circular-ones property. This algorithm leads to linear-time isomorphism algorithms for related graph classes, including Helly circular-arc…

Data Structures and Algorithms · Computer Science 2013-09-18 Andrew R. Curtis , Min Chih Lin , Ross M. McConnell , Yahav Nussbaum , Francisco J. Soulignac , Jeremy P. Spinrad , Jayme L. Szwarcfiter

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

Social and Information Networks · Computer Science 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

An ordered graph is a graph enhanced with a linear order on the vertex set. An ordered graph is a core if it does not have an order-preserving homomorphism to a proper subgraph. We say that $H$ is the core of $G$ if (i) $H$ is a core, (ii)…

Computational Complexity · Computer Science 2025-12-01 Michal Čertík , Andreas Emil Feldmann , Jaroslav Nešetřil , Paweł Rzążewski

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

We investigate the following problem: Given two embeddings G_1 and G_2 of the same abstract graph G on an orientable surface S, decide whether G_1 and G_2 are isotopic; in other words, whether there exists a continuous family of embeddings…

Computational Geometry · Computer Science 2013-10-11 Éric Colin de Verdière , Arnaud de Mesmay

The study of the topological structure of complex networks has fascinated researchers for several decades, and today we have a fairly good understanding of the types and reoccurring characteristics of many different complex networks.…

Social and Information Networks · Computer Science 2014-06-23 Matthieu Roy , Stefan Schmid , Gilles Trédan

A large driver of the complexity of graph learning is the interplay between structure and features. When analyzing the expressivity of graph neural networks, however, existing approaches ignore features in favor of structure, making it…

Machine Learning · Computer Science 2026-03-04 Martin Carrasco , Olga Zaghen , Kavir Sumaraj , Erik Bekkers , Bastian Rieck

The graph isomorphism is to determine whether two graphs are isomorphic. A closely related problem is automorphism detection, where an isomorphism between two graphs is a bijection between their vertex sets that preserves adjacency, and an…

Social and Information Networks · Computer Science 2019-11-18 Can Lu , Jeffrey Xu Yu , Zhiwei Zhang , Hong Cheng

We present the implementation of an algorithm for graph isomorphism testing, based on ideas about number of walks (of sufficiently large length) between vertices. The algorithm is expanded for strongly regular graphs (SRG-s) by testing the…

Combinatorics · Mathematics 2007-05-23 Michal Kaukic

The problem of measuring similarity of graphs and their nodes is important in a range of practical problems. There is a number of proposed measures, some of them being based on iterative calculation of similarity between two graphs and the…

Artificial Intelligence · Computer Science 2010-09-28 Mladen Nikolic

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

For graphs $G$ and $H$, a \emph{homomorphism} from $G$ to $H$ is an edge-preserving mapping from the vertex set of $G$ to the vertex set of $H$. For a fixed graph $H$, by \textsc{Hom($H$)} we denote the computational problem which asks…

Computational Complexity · Computer Science 2020-02-20 Karolina Okrasa , Paweł Rzążewski

The rise of graph analytic systems has created a need for ways to measure and compare the capabilities of these systems. Graph analytics present unique scalability difficulties. The machine learning, high performance computing, and visual…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-07 Siddharth Samsi , Vijay Gadepally , Michael Hurley , Michael Jones , Edward Kao , Sanjeev Mohindra , Paul Monticciolo , Albert Reuther , Steven Smith , William Song , Diane Staheli , Jeremy Kepner

Graphs are a powerful way to model interactions and relationships in data from a wide variety of application domains. In this setting, entities represented by vertices at the "center" of the graph are often more important than those…

Social and Information Networks · Computer Science 2014-11-06 Michael P. O'Brien , Blair D. Sullivan

In the branch of mathematics known as graph theory, graphs are considered as a set of points, called vertices, with connections between these points, called edges. The purpose of this paper is to study mappings between two graphs that have…

Combinatorics · Mathematics 2019-03-19 Jeffrey Beyerl , Cameron Sharpe

In this article, we revisit and expand our prior work on graph similarity. As with our earlier work, we focus on a view of similarity which does not require node correspondence between graphs under comparison. Our work is suited to the…

Discrete Mathematics · Computer Science 2025-12-10 Pierre Miasnikof , Alexander Y. Shetopaloff

A method for improving the efficiency of graph isomorphism testing is presented. The method uses the structure of the graph colored by vertex hash codes as a means of partitioning vertices into equivalence classes, which in turn reduces the…

Data Structures and Algorithms · Computer Science 2016-06-02 Thomas E. Portegys

We propose a simple and efficient local algorithm for graph isomorphism which succeeds for a large class of sparse graphs. This algorithm produces a low-depth canonical labeling, which is a labeling of the vertices of the graph that…

Probability · Mathematics 2023-09-20 Julia Gaudio , Miklós Z. Rácz , Anirudh Sridhar

Networks are often studied using the eigenvalues of their adjacency matrix, a powerful mathematical tool with a wide range of applications. Since in real systems the exact graph structure is not known, researchers resort to random graphs to…

Spectral Theory · Mathematics 2020-01-30 Pau Vilimelis Aceituno

We introduce and study the problem \mpd, which asks for two planar graphs $G_1$ and $G_2$ whether $G_1$ can be embedded such that its dual is isomorphic to $G_2$. Our algorithmic main result is an NP-completeness proof for the general case…

Data Structures and Algorithms · Computer Science 2013-03-08 Patrizio Angelini , Thomas Bläsius , Ignaz Rutter
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