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Gene regulatory networks are powerful abstractions of biological systems. Since the advent of high-throughput measurement technologies in biology in the late 90s, reconstructing the structure of such networks has been a central…

Quantitative Methods · Quantitative Biology 2018-12-20 Vân Anh Huynh-Thu , Guido Sanguinetti

Automatic control of greenhouse crop production is of great interest owing to the increasing energy and labor costs. In this work, we use two-level control, where the upper level generates suitable reference trajectories for states and…

Systems and Control · Electrical Eng. & Systems 2024-04-15 Kiran Kumar Sathyanarayanan , Philipp Sauerteig , Stefan Streif

The field of natural language processing has seen impressive progress in recent years, with neural network models replacing many of the traditional systems. A plethora of new models have been proposed, many of which are thought to be opaque…

Computation and Language · Computer Science 2019-01-15 Yonatan Belinkov , James Glass

The control of complex networks is of paramount importance in areas as diverse as ecosystem management, emergency response, and cell reprogramming. A fundamental property of networks is that perturbations to one node can affect other nodes,…

Disordered Systems and Neural Networks · Physics 2013-07-15 Sean P. Cornelius , William L. Kath , Adilson E. Motter

Traditional approaches to understanding the brain's resilience to neuropathology have identified neurophysiological variables, often described as brain or cognitive 'reserve,' associated with better outcomes. However, mechanisms of function…

Neurons and Cognition · Quantitative Biology 2017-01-18 John D. Medaglia , Fabio Pasqualetti , Roy H. Hamilton , Sharon L. Thompson-Schill , Danielle S. Bassett

Neuromorphic control is receiving growing attention due to the multifaceted advantages it brings over more classical control approaches, including: sparse and on-demand sensing, information transmission, and actuation; energy-efficient…

Systems and Control · Electrical Eng. & Systems 2025-06-13 Taisia Medvedeva , Alessio Franci , Fernando Castaños

Applications of neural networks to data analyses in natural sciences are complicated by the fact that many inputs are subject to systematic uncertainties. To control the dependence of the neural network function to variations of the input…

Data Analysis, Statistics and Probability · Physics 2020-02-25 Stefan Wunsch , Simon Jörger , Roger Wolf , Günter Quast

The control of biological systems presents interesting applications such as cell reprogramming or drug target identification. A common type of control strategy consists in a set of interventions that, by fixing the values of some variables,…

Molecular Networks · Quantitative Biology 2021-12-21 Laura Cifuentes Fontanals , Elisa Tonello , Heike Siebert

This article studies the existing methods of virtualization of different resources. The positive and negative aspects of each of the methods are analyzed, the perspectivity of the approach is noted. It is also made an attempt to classify…

Networking and Internet Architecture · Computer Science 2019-04-18 Dmytro Ageyev , Oleg Bondarenko , Tamara Radivilova , Walla Alfroukh

This chapter aims to provide next-level understanding of the problems of the world and the solutions available to those problems, which lie very well within the domain of neural computing, and at the same time are intelligent in their…

Neural and Evolutionary Computing · Computer Science 2021-07-07 Ayushe Gangal , Peeyush Kumar , Sunita Kumari , Aditya Kumar

Computer infections such as viruses and worms spread over networks of contacts between computers, with different types of networks being exploited by different types of infections. Here we analyze the structures of several of these…

Networking and Internet Architecture · Computer Science 2007-05-23 Justin Balthrop , Stephanie Forrest , M. E. J. Newman , Matthew M. Williamson

We provide a comprehensive review of the existing literature on memory-augmented GNNs. We review these works through the lens of psychology and neuroscience, which has several established theories on how multiple memory systems and…

Machine Learning · Computer Science 2023-07-18 Guixiang Ma , Vy A. Vo , Theodore Willke , Nesreen K. Ahmed

In the rapidly advancing landscape of contemporary technology, power electronics assume a pivotal role across diverse applications, ranging from renewable energy systems to electric vehicles and consumer electronics. The efficacy and…

Systems and Control · Electrical Eng. & Systems 2023-10-10 Maryam Bahrami , Zeyad Khashroum

This report discusses the application of neural networks (NNs) as small segments of the brain. The networks representing the biological connectome are altered both spatially and temporally. The degradation techniques applied here are…

Neurons and Cognition · Quantitative Biology 2020-08-04 Jacob Adamczyk

Boolean networks have been successfully used in modelling gene regulatory networks. In this paper we propose a reduction method that reduces the complexity of a Boolean network but keeps dynamical properties and topological features and…

Quantitative Methods · Quantitative Biology 2009-07-06 Alan Veliz-Cuba

This article reviews and presents various solved and open problems in the development, analysis, and control of epidemic models. We are interested in presenting a relatively concise report for new engineers looking to enter the field of…

Optimization and Control · Mathematics 2015-08-26 Cameron Nowzari , Victor M. Preciado , George J. Pappas

Controlling a complex network is of great importance in many applications. The network can be controlled by inputting external control signals through some selected nodes, which are called input nodes. Previous works found that the majority…

Social and Information Networks · Computer Science 2019-10-23 Xizhe Zhang , Qian Li

Networked control systems are closed-loop feedback control systems containing system components that may be distributed geographically in different locations and interconnected via a communication network such as the Internet. The quality…

Robotics · Computer Science 2023-07-19 Mahsa Noroozi , Kai Wang

Cells are regulated by networks of controllers having many targets, and targets affected by many controllers, but these "many-to-many" combinatorial control systems are poorly understood. Here we analyze distinct cellular networks…

Molecular Networks · Quantitative Biology 2012-01-06 Jacob D. Feala , Jorge Cortes , Phillip M. Duxbury , Andrew D. McCulloch , Carlo Piermarocchi , Giovanni Paternostro

Neural network models have achieved state-of-the-art performances in a wide range of natural language processing (NLP) tasks. However, a long-standing criticism against neural network models is the lack of interpretability, which not only…

Computation and Language · Computer Science 2021-10-26 Xiaofei Sun , Diyi Yang , Xiaoya Li , Tianwei Zhang , Yuxian Meng , Han Qiu , Guoyin Wang , Eduard Hovy , Jiwei Li