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This work introduces a number of algebraic topology approaches, such as multicomponent persistent homology, multi-level persistent homology and electrostatic persistence for the representation, characterization, and description of small…

Quantitative Methods · Quantitative Biology 2018-02-07 Zixuan Cang , Lin Mu , Guowei Wei

We develop a novel hierarchy for zero-dimensional persistence pairs, i.e., connected components, which is capable of capturing more fine-grained spatial relations between persistence pairs. Our work is motivated by a lack of spatial…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

We present an algorithm for computing the barcode of the image of a morphisms in persistent homology induced by an inclusion of filtered finite-dimensional chain complexes. These algorithms make use of the clearing optimization and can be…

Algebraic Topology · Mathematics 2022-01-13 Ulrich Bauer , Maximilian Schmahl

In this paper we propose a global optimization-based approach to jointly matching a set of images. The estimated correspondences simultaneously maximize pairwise feature affinities and cycle consistency across multiple images. Unlike…

Computer Vision and Pattern Recognition · Computer Science 2015-12-03 Xiaowei Zhou , Menglong Zhu , Kostas Daniilidis

Supervised machine learning pipelines trained on features derived from persistent homology have been experimentally observed to ignore much of the information contained in a persistence diagram. Computing persistence diagrams is often the…

Machine Learning · Statistics 2025-07-11 Nicole Abreu , Parker B. Edwards , Francis Motta

A multiparameter filtration, or a multifiltration, may in many cases be seen as the collection of sublevel sets of a vector function, which we call a multifiltering function. The main objective of this paper is to obtain a better…

Geometric Topology · Mathematics 2026-01-01 Guillaume Brouillette

Hierarchical clustering is a stronger extension of one of today's most influential unsupervised learning methods: clustering. The goal of this method is to create a hierarchy of clusters, thus constructing cluster evolutionary history and…

Data Structures and Algorithms · Computer Science 2021-01-14 MohammadTaghi Hajiaghayi , Marina Knittel

We introduce harmonic persistent homology spaces for filtrations of finite simplicial complexes. As a result we can associate concrete subspaces of cycles to each bar of the barcode of the filtration. We prove stability of the harmonic…

Algebraic Topology · Mathematics 2024-12-30 Saugata Basu , Nathanael Cox

Persistent homology theory is a relatively new but powerful method in data analysis. Using simplicial complexes, classical persistent homology is able to reveal high dimensional geometric structures of datasets, and represent them as…

Algebraic Topology · Mathematics 2023-12-05 Yaru Gao , Yan Xu , Fengchun Lei

Composite minimization involves a collection of smooth functions which are aggregated in a nonsmooth manner. In the convex setting, we design an algorithm by linearizing each smooth component in accordance with its main curvature. The…

Optimization and Control · Mathematics 2019-03-26 Jérôme Bolte , Zheng Chen , Edouard Pauwels

Persistent homology, an algebraic method for discerning structure in abstract data, relies on the construction of a sequence of nested topological spaces known as a filtration. Two-parameter persistent homology allows the analysis of data…

Computational Geometry · Computer Science 2022-07-08 Anway De , Thong Vo , Matthew Wright

Hypergraph is a topological model for networks. In order to study the topology of hypergraphs, the homology of the associated simplicial complexes and the embedded homology have been invented. In this paper, we give some algorithms to…

Algebraic Topology · Mathematics 2018-01-03 Shiquan Ren , Chengyuan Wu , Stephane Bressan , Jie Wu

Many datasets can be viewed as a noisy sampling of an underlying space, and tools from topological data analysis can characterize this structure for the purpose of knowledge discovery. One such tool is persistent homology, which provides a…

We study semi-dynamical systems associated to delay differential equations. We give a simple criteria to obtain weak and strong persistence and provide sufficient conditions to guarantee uniform persistence. Moreover, we show the existence…

Classical Analysis and ODEs · Mathematics 2020-02-04 Pablo Amster , Melanie Bondorevsky

The computational cost of persistent homology is often dominated by the growth of the underlying simplicial filtrations. Many different filtrations exist, each with its own assumptions and trade-offs, but all face some form of this growth…

Algebraic Topology · Mathematics 2026-05-15 António Leitão

Persistent homology is a multiscale method for analyzing the shape of sets and functions from point cloud data arising from an unknown distribution supported on those sets. When the size of the sample is large, direct computation of the…

The Betti tables of a multigraded module encode the grades at which there is an algebraic change in the module. Multigraded modules show up in many areas of pure and applied mathematics, and in particular in topological data analysis, where…

Computational Geometry · Computer Science 2026-02-17 Yuan Luo , Dmitriy Morozov , Luis Scoccola

Matching pursuit algorithms are an important class of algorithms in signal processing and machine learning. We present a blended matching pursuit algorithm, combining coordinate descent-like steps with stronger gradient descent steps, for…

Optimization and Control · Mathematics 2019-11-21 Cyrille W. Combettes , Sebastian Pokutta

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

Machine Learning · Computer Science 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

Artificial neural networks can learn complex, salient data features to achieve a given task. On the opposite end of the spectrum, mathematically grounded methods such as topological data analysis allow users to design analysis pipelines…

Machine Learning · Computer Science 2022-12-29 Mattia G. Bergomi , Massimo Ferri , Alessandro Mella , Pietro Vertechi