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Connection matrices are a generalization of Morse boundary operators from the classical Morse theory for gradient vector fields. Developing an efficient computational framework for connection matrices is particularly important in the…

Algebraic Topology · Mathematics 2023-09-26 Tamal K. Dey , Michał Lipiński , Marian Mrozek , Ryan Slechta

Higher-dimensional rewriting is founded on a duality of rewrite systems and cell complexes, connecting computational mathematics to higher categories and homotopy theory: the two sides of a rewrite rule are two halves of the boundary of an…

Category Theory · Mathematics 2023-04-20 Amar Hadzihasanovic , Diana Kessler

This technical report introduces a novel approach to efficient computation in homological algebra over fields, with particular emphasis on computing the persistent homology of a filtered topological cell complex. The algorithms here…

Algebraic Topology · Mathematics 2017-10-18 Gregory Henselman , Robert Ghrist

Hypergraphs are mathematical models for many problems in data sciences. In recent decades, the topological properties of hypergraphs have been studied and various kinds of (co)homologies have been constructed (cf. [3, 4, 12]). In this…

Algebraic Topology · Mathematics 2018-03-15 Stephane Bressan , Jingyan Li , Shiquan Ren , Jie Wu

Persistent homology was shown by Carlsson and Zomorodian to be homology of graded chain complexes with coefficients in the graded ring $\kk[t]$. As such, the behavior of persistence modules -- graded modules over $\kk[t]$ is an important…

Computational Geometry · Computer Science 2013-02-18 Primoz Skraba , Mikael Vejdemo-Johansson

Assume that a finite set of points is randomly sampled from a subspace of a metric space. Recent advances in computational topology have provided several approaches to recovering the geometric and topological properties of the underlying…

Algebraic Topology · Mathematics 2021-01-29 Peter Bubenik , Peter T. Kim

This paper shows a mathematical formalization, algorithms and computation software of volume optimal cycles, which are useful to understand geometric features shown in a persistence diagram. Volume optimal cycles give us concrete and…

Algebraic Topology · Mathematics 2017-12-15 Ippei Obayashi

Feature selection is an important tool to deal with high dimensional data. In unsupervised case, many popular algorithms aim at maintaining the structure of the original data. In this paper, we propose a simple and effective feature…

Machine Learning · Statistics 2020-04-06 Xiaoyun Li , Chengxi Wu , Ping Li

This contribution introduces a novel signal extrapolation algorithm and its application to image error concealment. The signal extrapolation is carried out by iteratively generating a model of the signal suffering from distortion. Thereby,…

Image and Video Processing · Electrical Eng. & Systems 2022-07-15 Jürgen Seiler , André Kaup

Determining whether two graphs are isomorphic is a fundamental problem with practical applications in areas such as molecular chemistry or social network analysis, yet it remains a challenging task, with exact solutions often being…

The persistence diagram (PD) is an increasingly popular topological descriptor. By encoding the size and prominence of topological features at varying scales, the PD provides important geometric and topological information about a space.…

We provide a novel framework to compute a discrete vector potential of a given discrete vector field on arbitrary polyhedral meshes. The framework exploits the concept of acyclic matching, a combinatorial tool at the core of discrete Morse…

Numerical Analysis · Mathematics 2022-07-20 Silvano Pitassi , Riccardo Ghiloni , Ruben Specogna

This work proposes a multi-image matching method to estimate semantic correspondences across multiple images. In contrast to the previous methods that optimize all pairwise correspondences, the proposed method identifies and matches only a…

Computer Vision and Pattern Recognition · Computer Science 2018-05-02 Qianqian Wang , Xiaowei Zhou , Kostas Daniilidis

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

The interaction between discrete and continuous mathematics lies at the heart of many fundamental problems in applied mathematics and computational sciences. In this paper we discuss the problem of discretizing vector-valued functions…

Numerical Analysis · Mathematics 2020-05-29 Paweł Dłotko , Thomas Wanner

Our objective in this article is to show a possibly interesting structure of homotopic nature appearing in persistent (co)homology. Assuming that the filtration of the (say) simplicial set embedded in a finite dimensional vector space…

Algebraic Topology · Mathematics 2014-12-08 Estanislao Herscovich

We introduce a new algorithm to parallelise the computation of persistent homology of 2D alpha complexes. Our algorithm distributes the input point cloud among the cores which then compute a cover based on a rectilinear grid. We show how to…

Algebraic Topology · Mathematics 2024-03-04 Freya Jensen , Álvaro Torras-Casas

The complexity of biological systems, and the increasingly large amount of associated experimental data, necessitates that we develop mathematical models to further our understanding of these systems. As biological systems are generally not…

Quantitative Methods · Quantitative Biology 2022-08-02 Sean T. Vittadello , Michael P. H. Stumpf

A block decomposition method is proposed for minimizing a (possibly non-convex) continuously differentiable function subject to one linear equality constraint and simple bounds on the variables. The proposed method iteratively selects a…

Optimization and Control · Mathematics 2019-03-06 Andrea Cristofari

We propose a functorial framework for persistent homology based on finite topological spaces and their associated posets. Starting from a finite metric space, we associate a filtration of finite topologies whose structure maps are…

Algebraic Topology · Mathematics 2026-02-24 Selçuk Kayacan