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The formation of stable dimers on top of terraces during epitaxial growth is investigated in detail. In this paper we focus on mean-field theory, the standard approach to study nucleation. Such theory is shown to be unsuitable for the…

Statistical Mechanics · Physics 2007-05-23 Paolo Politi , Claudio Castellano

We study the statistics of the number of executed hops of adatoms at the surface of films grown with the Clarke-Vvedensky (CV) model in simple cubic lattices. The distributions of this number, $N$, are determined in films with average…

Statistical Mechanics · Physics 2020-07-27 Edwin E. Mozo Luis , Ismael S. S. Carrasco , Thiago A. de Assis , Fábio D. A. Aarão Reis

Via molecular dynamics simulations we have studied kinetics of vapor-"solid" phase transition in an active matter model in which self-propulsion is introduced via the well-known Vicsek rule. The overall density of the particles is chosen in…

Soft Condensed Matter · Physics 2020-11-05 Subhajit Paul , Arabinda Bera , Subir K. Das

Stochastic growth of binary alloys on a weakly interacting substrate is studied by kinetic Monte Carlo simulation. The underlying lattice model relates to fcc alloys, and the kinetics are based on deposition, atomic migration with…

Statistical Mechanics · Physics 2007-05-23 S. Heinrichs , W. Dieterich , P. Maass

Interfaces in tissues are ubiquitous, both between tissue and environment as well as between populations of different cell types. The propagation of an interface can be driven mechanically. % e.g. by a difference in the respective…

Tissues and Organs · Quantitative Biology 2024-06-03 Tobias Büscher , Angel L. Diez , Gerhard Gompper , Jens Elgeti

We theoretically study the transport properties of self-propelled particles on complex structures, such as motor proteins on filament networks. A general master equation formalism is developed to investigate the persistent motion of…

Soft Condensed Matter · Physics 2014-09-19 M. Reza Shaebani , Zeinab Sadjadi , Igor M. Sokolov , Heiko Rieger , Ludger Santen

We consider the long-standing problem of Rayleigh-Taylor instability with variable acceleration, and focus on the early-time dynamics of an interface separating incompressible ideal fluids of different densities subject to an acceleration…

Plasma Physics · Physics 2019-06-25 Des L. Hill , Aklant K. Bhowmick , Snezhana I. Abarzhi

Neural Cellular Automata (NCAs) offer a way to study the growth of two-dimensional artificial organisms from a single seed cell. From the outset, NCA-grown organisms have had issues with stability, their natural boundary often breaking down…

Neural and Evolutionary Computing · Computer Science 2025-12-11 James Stovold

Direct numerical simulation of the strongly nonlinear stages of instability development for a non-conducting liquid with a charged free surface in a normal electric field is performed. It is demonstrated that two main stages of the…

Fluid Dynamics · Physics 2026-01-28 N. M. Zubarev , E. A. Kochurin

In this paper, we analyse a model for the growth of three-dimensional walled cells. In this model the biomechanical expansion of the cell is coupled with the geometry of its wall. We consider that the density of building material depends on…

Analysis of PDEs · Mathematics 2015-02-20 Vincent Calvez , Laetitia Giraldi

This paper provides an elementary introduction to the basic concepts used in describing epitaxial crystal growth in terms of the thermodynamics and kinetics of atomic steps. Selected applications to morphological instabilities of stepped…

Materials Science · Physics 2007-05-23 Joachim Krug

An extension of the Burton-Cabrera-Frank model [Phil. Trans. R. Soc. London, Ser. A 243, 299 (1951)] including diffusion along steps and entropic step-step interaction is introduced. This extended model is successfully applied to simulate…

Materials Science · Physics 2007-05-23 Heike Emmerich

Stochastic processes govern the time evolution of a huge variety of realistic systems throughout the sciences. A minimal description of noisy many-particle systems within a Markovian picture and with a notion of spatial dimension is given…

Statistical Mechanics · Physics 2021-02-25 Andrea Pizzi , Andreas Nunnenkamp , Johannes Knolle

We use a one-dimensional step model to study quantitatively the growth of step bunches on Si(111) surfaces induced by a direct heating current. Parameters in the model are fixed from experimental measurements near 900 deg C under the…

Materials Science · Physics 2009-10-31 Da-Jiang Liu , John D. Weeks

Coarsening, the process where larger structures grow at the expense of smaller ones, is a fundamental aspect of multiphase systems. The cell cytoplasm exemplifies an out-of-equilibrium multiphase system, where phase-separated condensates…

We investigate the development of mobility inversion and fingering when a granular suspension is injected radially between horizontal parallel plates of a cell filled with a miscible fluid. While the suspension spreads uniformly when the…

Fluid Dynamics · Physics 2021-01-01 Arshad Kudrolli , Rausan Jewel , Ram Sudhir Sharma , Alexander P. Petroff

Cell growth in size is a complex process coordinated by intrinsic and environmental signals. In a recent work [Tzur et al., Science, 2009, 325:167-171], size distributions in an exponentially growing population of mammalian cells were used…

Cell Behavior · Quantitative Biology 2015-06-16 Yucheng Hu , Tianqi Zhu

Structural and kinetic aspects of 2-D irreversible metal deposition under potentiostatic conditions are analyzed by means of dynamic Monte Carlo simulations employing embedded atom potentials for a model system. Three limiting models, all…

Materials Science · Physics 2007-05-23 M. Cecilia Gimenez , Mario G. Del Popolo , Ezequiel P. M. Leiva

The propagation of sidewall steps during the growth of nanowires is calculated in the frame of the Burton-Cabrera-Frank model. The stable shape of the nanowire comprises a cylinder section on top of a cone section: their characteristics are…

Materials Science · Physics 2020-03-02 E. Bellet-Amalric , Régis André , C. Bougerol , M. den Hertog , Ali Jaffal , Joël Cibert

Stall cells are spanwise-periodic flow structures that spontaneously form on airfoils operating near stall, fundamentally altering the aerodynamic loading distribution. Despite decades of experimental observations, a complete theoretical…

Fluid Dynamics · Physics 2026-02-11 Rishabh Mishra , Emmanuel Guilmineau , Ingrid Neunaber , Caroline Braud