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Alignment algorithms usually rely on simplified models of gaps for computational efficiency. Based on an isomorphism between alignments and physical helix-coil models, we show in statistical mechanics that alignments with realistic laws for…

Genomics · Quantitative Biology 2015-06-26 E. Yeramian , E. Debonneuil

Protein structures can be encoded into binary sequences, these are used to define a Hamming distance in conformational space: the distance between two different molecular conformations is the number of different bits in their sequences.…

Biological Physics · Physics 2008-12-14 Cyril Laboulais , Mohammed Ouali , Marc Le Bret , Jacques Gabarro-Arpa

Time slots are a valuable channel resource in the data link network with time division multiple access architecture. The need for finding a secure and efficient way to meet the requirements of large access capacity, differentiated access,…

Cryptography and Security · Computer Science 2024-03-05 Niu Xianhua , Ma Jiabei , Zhou Enzhi , Wang Yaoxuan , Zeng Bosen , Li Zhiping

In an increasingly interconnected world, understanding congestion-related phenomena in transportation and their underlying mechanisms is crucial for improving efficiency. As the transportation system becomes denser, different modes of…

Physics and Society · Physics 2025-04-04 Sakurako Tanida , Thorsten Pöschel

In this work, we study the performance of multiple-hop mixed frequency (RF)/free-space optical (FSO) communication-based decode-and-forward protocol for multicast networks. So far, serving a large number of users is considered a promising…

Signal Processing · Electrical Eng. & Systems 2022-03-23 Olfa Ben Yahia , Eylem Erdogan , Gunes Karabulut Kurt

A shelf is a set with a binary operation~$\op$ satisfying $a \op (b \op c) = (a \op b) \op (a \op c)$. Racks are shelves with invertible translations $b \mapsto a \op b$; many of their aspects, including cohomological, are better understood…

Algebraic Topology · Mathematics 2015-03-25 Victoria Lebed

This paper presents the constrained Hybrid Metaheuristic (cHM) algorithm as a general framework for continuous optimisation. Unlike many existing metaheuristics that are tailored to specific function classes or problem domains, cHM is…

Neural and Evolutionary Computing · Computer Science 2026-03-20 Piotr A. Kowalski , Szymon Kucharczyk , Jacek Mańdziuk

Concatenation is a method of building long codes out of shorter ones, it attempts to meet the problem of decoding complexity by breaking the required computation into manageable segments. Concatenated Continuous Phase Frequency Shift Keying…

Information Theory · Computer Science 2011-05-24 Labib Francis Gergis

In this letter, we analyze the performance of mixed coherent and non-coherent transmissions approach, which can improve the performance of cell-free multiple-input multiple-output orthogonal frequency division multiplexing (CF mMIMO-OFDM)…

Information Theory · Computer Science 2024-11-12 Guoyu Li , Shaochuan Wu , Changsheng You , Wenbin Zhang , Guanyu Shang

Quasi-complementary sequence sets (QCSSs) play an important role in multi-carrier code division multiple access (MC-CDMA) systems as they can support more users than perfect complementary sequence sets (PCSSs). The objective of this paper…

Information Theory · Computer Science 2025-03-19 Peng Wang , Ziling Heng , Chengju Li

Forecast reconciliation has attracted significant research interest in recent years, with most studies taking the hierarchy of time series as given. We extend existing work that uses time series clustering to construct hierarchies, with the…

Methodology · Statistics 2024-09-10 Bohan Zhang , Anastasios Panagiotelis , Han Li

The smooth heap is a recently introduced self-adjusting heap [Kozma, Saranurak, 2018] similar to the pairing heap [Fredman, Sedgewick, Sleator, Tarjan, 1986]. The smooth heap was obtained as a heap-counterpart of Greedy BST, a binary search…

Data Structures and Algorithms · Computer Science 2021-07-13 Maria Hartmann , László Kozma , Corwin Sinnamon , Robert E. Tarjan

The normal forms associated with holomorphic systems are well known in the literature. In this paper we are concerned about studying the piecewise smooth holomorphic systems (PWHS). Specifically, we classify the possible phase portraits of…

Dynamical Systems · Mathematics 2022-01-19 L. F. S. Gouveia , Gabriel Rondón , P. R. da Silva

In this paper, we report the identification of global and partial phase synchronizations in linear arrays of unidirectionally coupled piecewise linear time-delay systems with two different coupling configurations. In particular, in a linear…

Chaotic Dynamics · Physics 2012-07-23 R. Suresh , D. V. Senthilkumar , M. Lakshmanan , J. Kurths

Obtaining a rigorous and reliable method for linking computer simulations of polymer blends and composites at different length scales of interest is a highly desirable goal in soft matter physics. In this paper a multiscale modeling…

Soft Condensed Matter · Physics 2015-05-19 J. McCarty , M. G. Guenza

Optimizing a connection through a quantum repeater network requires careful attention to the photon propagation direction of the individual links, the arrangement of those links into a path, the error management mechanism chosen, and the…

Quantum Physics · Physics 2017-01-18 Rodney Van Meter , Takahiko Satoh , Shota Nagayama , Takaaki Matsuo , Shigeya Suzuki

Recent experimental advances in Floquet engineering and controlling dissipation in open systems have brought about unprecedented flexibility in tailoring novel phenomena without any static and Hermitian analogues. It can be epitomized by…

Mesoscale and Nanoscale Physics · Physics 2022-06-22 Chun-Hui Liu , Haiping Hu , Shu Chen

The fluctuations and correlations of matrix elements of cross sections are investigated in open systems that are chaotic in the classical limit. The form of the correlation functions is discussed within a statistical analysis and tested in…

Chaotic Dynamics · Physics 2007-08-22 Bruno Eckhardt , Imre Varga , Peter Pollner

The aim of this paper is a theoretical study of a cache system in order to optimize proxy cache systems and to modernize construction principles including prefetching schemes. Two types of correlations, Zipf-like distribution and…

Networking and Internet Architecture · Computer Science 2007-05-23 Dmitry Dolgikh , Andrei Sukhov

Golay complementary set (GCS) plays a vital role in reducing peak-to-mean envelope power ratio (PMEPR) in orthogonal frequency division multiplexing (OFDM). A more general version of GCS is a multiple shift complementary set (MSCS), where…

Information Theory · Computer Science 2023-05-12 Abhishek Roy , Sudhan Majhi