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In the context of inference with expectation constraints, we propose an approach based on the "loopy belief propagation" algorithm LBP, as a surrogate to an exact Markov Random Field MRF modelling. A prior information composed of…

Machine Learning · Computer Science 2015-05-13 Cyril Furtlehner , Jean-Marc Lasgouttes , Anne Auger

Long-term time series forecasting (LTSF) is hampered by the challenge of modeling complex dependencies that span multiple temporal scales and frequency resolutions. Existing methods, including Transformer and MLP-based models, often…

Machine Learning · Computer Science 2025-09-22 Qianyang Li , Xingjun Zhang , Shaoxun Wang , Jia Wei

We present a multi-scale differentiable brain modeling workflow utilizing BrainPy, a unique differentiable brain simulator that combines accurate brain simulation with powerful gradient-based optimization. We leverage this capability of…

Neural and Evolutionary Computing · Computer Science 2024-09-26 Chaoming Wang , Muyang Lyu , Tianqiu Zhang , Sichao He , Si Wu

A large number of neural network models of associative memory have been proposed in the literature. These include the classical Hopfield networks (HNs), sparse distributed memories (SDMs), and more recently the modern continuous Hopfield…

Neural and Evolutionary Computing · Computer Science 2022-06-20 Beren Millidge , Tommaso Salvatori , Yuhang Song , Thomas Lukasiewicz , Rafal Bogacz

Clinical natural language processing (NLP) is increasingly in demand in both clinical research and operational practice. However, most of the state-of-the-art solutions are transformers-based and require high computational resources,…

Computation and Language · Computer Science 2025-04-18 Jianlin Shi , Qiwei Gan , Elizabeth Hanchrow , Annie Bowles , John Stanley , Adam P. Bress , Jordana B. Cohen , Patrick R. Alba

The availability of large-scale neuronal population datasets necessitates new methods to model population dynamics and extract interpretable, scientifically translatable insights. Existing deep learning methods often overlook the biological…

Neurons and Cognition · Quantitative Biology 2024-11-14 Parsa Delavari , Ipek Oruc , Timothy H Murphy

Flow Matching (FM) is a simulation-free method for learning a continuous and invertible flow to interpolate between two distributions, and in particular to generate data from noise. Inspired by the variational nature of the diffusion…

Machine Learning · Statistics 2025-07-14 Chen Xu , Xiuyuan Cheng , Yao Xie

The study of neuronal morphology is important not only for its potential relationship with neuronal dynamics, but also as a means to classify diverse types of cells and compare than among species, organs, and conditions. In the present…

Neurons and Cognition · Quantitative Biology 2024-03-11 Alexandre Benatti , Henrique F. de Arruda , Luciano da F. Costa

The latent position model (LPM) is a popular method used in network data analysis where nodes are assumed to be positioned in a $p$-dimensional latent space. The latent shrinkage position model (LSPM) is an extension of the LPM which…

Methodology · Statistics 2024-04-25 Xian Yao Gwee , Isobel Claire Gormley , Michael Fop

Nonlinear interactions in the dendritic tree play a key role in neural computation. Nevertheless, modeling frameworks aimed at the construction of large-scale, functional spiking neural networks, such as the Neural Engineering Framework,…

Neurons and Cognition · Quantitative Biology 2021-01-01 Andreas Stöckel , Chris Eliasmith

We propose a method for multi-scale hybrid simulations of molecular dynamics (MD) and computational fluid dynamics (CFD). In the method, usual lattice-mesh based simulations are applied for CFD level, but each lattice is associated with a…

Soft Condensed Matter · Physics 2014-01-20 Shugo Yasuda , Ryoichi Yamamoto

The precise fusion of computational fluid dynamic (CFD) data, wind tunnel tests data, and flight tests data in aerodynamic area is essential for obtaining comprehensive knowledge of both localized flow structures and global aerodynamic…

Machine Learning · Computer Science 2026-04-01 Qinye Zhu , Yu Xiang , Jun Zhang , Wenyong Wang

Predicting user influence in social networks is a critical problem, and hypergraphs, as a prevalent higher-order modeling approach, provide new perspectives for this task. However, the absence of explicit cascade or infection probability…

Social and Information Networks · Computer Science 2025-08-22 Su-Su Zhang , JinFeng Xie , Yang Chen , Min Gao , Cong Li , Chuang Liu , Xiu-Xiu Zhan

Nowadays, the coupling of electronic structure and machine learning techniques serves as a powerful tool to predict chemical and physical properties of a broad range of systems. With the aim of improving the accuracy of predictions, a large…

Recent works have highlighted the need for a new dynamical paradigm in the modeling of brain function and evolution. Specifically, these models should incorporate non-constant and asymmetric synaptic weights $T_{ij}$ in the neuron-neuron…

Neurons and Cognition · Quantitative Biology 2025-11-03 Franco Cardin , Alberto Lovison , Amos Maritan , Aram Megighian

In this work, we have developed a multiscale computational algorithm to couple finite element method with an open source molecular dynamics code --- the Large scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) --- to perform…

Soft Condensed Matter · Physics 2019-09-17 Takahiro Murashima , Shingo Urata , Shaofan Li

We propose Parallelised Diffeomorphic Sampling-based Motion Planning (PDMP). PDMP is a novel parallelised framework that uses bijective and differentiable mappings, or diffeomorphisms, to transform sampling distributions of sampling-based…

Robotics · Computer Science 2021-09-24 Tin Lai , Weiming Zhi , Tucker Hermans , Fabio Ramos

Feature pyramids have been proven powerful in image understanding tasks that require multi-scale features. State-of-the-art methods for multi-scale feature learning focus on performing feature interactions across space and scales using…

Computer Vision and Pattern Recognition · Computer Science 2022-01-12 Gangming Zhao , Weifeng Ge , Yizhou Yu

Multiplex networks are increasingly common across diverse domains, motivating the development of clustering methods that uncover patterns at multiple levels. Existing approaches typically focus on clustering either entire networks or nodes…

Methodology · Statistics 2025-07-15 C. J. Clarke , Michael Fop

Current research has found that some deep neural networks exhibit strong hierarchical self-similarity in feature representation or parameter distribution. However, aside from preliminary studies on how the power-law distribution of weights…

Machine Learning · Computer Science 2025-07-25 Jingyi Ding , Chengwen Qi , Hongfei Wang , Jianshe Wu , Licheng Jiao , Yuwei Guo , Jian Gao