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Graph classification is a significant problem in many scientific domains. It addresses tasks such as the classification of proteins and chemical compounds into categories according to their functions, or chemical and structural properties.…

Machine Learning · Computer Science 2019-02-25 Marcelo Daniel Gutierrez Mallea , Peter Meltzer , Peter J Bentley

Architecture styles characterise families of architectures sharing common characteristics. We have recently proposed configuration logics for architecture style specification. In this paper, we study a graphical notation to enhance…

Software Engineering · Computer Science 2016-08-12 Anastasia Mavridou , Eduard Baranov , Simon Bliudze , Joseph Sifakis

We study the recovery of the underlying graphs or permutations for tensors in the tensor ring or tensor train format. Our proposed algorithms compare the matricization ranks after down-sampling, whose complexity is $O(d\log d)$ for $d$-th…

Numerical Analysis · Mathematics 2024-04-04 Ziang Chen , Jianfeng Lu , Anru R. Zhang

Recently, the emerging graph Transformers have made significant advancements for node classification on graphs. In most graph Transformers, a crucial step involves transforming the input graph into token sequences as the model input,…

Machine Learning · Computer Science 2024-06-28 Jinsong Chen , Siyu Jiang , Kun He

Complex models, such as neural networks (NNs), are comprised of many interrelated components. In order to represent these models, eliciting and characterising the relations between components is essential. Perhaps because of this, diagrams,…

Human-Computer Interaction · Computer Science 2022-06-13 Guy Clarke Marshall , Caroline Jay , Andre Freitas

We introduce a graphical language for closed symmetric monoidal categories based on an extension of string diagrams with special bracket wires representing internal homs. These bracket wires make the structure of the internal hom functor…

Logic in Computer Science · Computer Science 2025-12-09 Callum Reader , Alessandro Di Giorgio

Matrix Graph Grammars (MGG) is a novel approach to the study of graph dynamics ([15]). In the present contribution we look at MGG as a formal grammar and as a model of computation, which is a necessary step in the more ambitious program of…

Discrete Mathematics · Computer Science 2009-11-16 Pedro Pablo Perez Velasco

Inspired by some new advances on normal factor graphs (NFGs), we introduce NFGs as a simple and intuitive diagrammatic approach towards encoding some concepts from linear algebra. We illustrate with examples the workings of such an approach…

Information Theory · Computer Science 2012-09-18 Ali Al-Bashabsheh , Yongyi Mao , Pascal O. Vontobel

This work is motivated by the necessity to automate the discovery of structure in vast and evergrowing collection of relational data commonly represented as graphs, for example genomic networks. A novel algorithm, dubbed Graphitour, for…

Data Structures and Algorithms · Computer Science 2017-05-25 Leonid Peshkin

We present a form of algebraic reasoning for computational objects which are expressed as graphs. Edges describe the flow of data between primitive operations which are represented by vertices. These graphs have an interface made of…

Logic in Computer Science · Computer Science 2010-07-23 Lucas Dixon , Ross Duncan , Aleks Kissinger

Diagrammatic, analogical or iconic representations are often contrasted with linguistic or logical representations, in which the shape of the symbols is arbitrary. The aim of this paper is to make a case for the usefulness of diagrams in…

Computation and Language · Computer Science 2007-05-23 Catherine Recanati

The objective of knowledge graph embedding is to encode both entities and relations of knowledge graphs into continuous low-dimensional vector spaces. Previously, most works focused on symbolic representation of knowledge graph with…

Computation and Language · Computer Science 2016-12-14 Jiacheng Xu , Kan Chen , Xipeng Qiu , Xuanjing Huang

Knowledge graph reasoning is the fundamental component to support machine learning applications such as information extraction, information retrieval, and recommendation. Since knowledge graphs can be viewed as the discrete symbolic…

Artificial Intelligence · Computer Science 2021-04-01 Jing Zhang , Bo Chen , Lingxi Zhang , Xirui Ke , Haipeng Ding

We explore the concept of a graph homomorphism through the lens of C$^*$-algebras and operator systems. We start by studying the various notions of a quantum graph homomorphism and examine how they are related to each other. We then define…

Operator Algebras · Mathematics 2016-02-23 Carlos M. Ortiz , Vern I. Paulsen

Although traditional symbolic reasoning methods are highly interpretable, their application in knowledge graph link prediction is limited due to their low computational efficiency. In this paper, we propose a new neural symbolic reasoning…

Artificial Intelligence · Computer Science 2022-04-20 Yu-hao Wu , Hou-biao Li

We show that an interesting class of feed-forward neural networks can be understood as quantitative argumentation frameworks. This connection creates a bridge between research in Formal Argumentation and Machine Learning. We generalize the…

Neural and Evolutionary Computing · Computer Science 2020-12-11 Nico Potyka

The study of abstraction and composition - the focus of category theory - naturally leads to sophisticated diagrams which can encode complex algebraic semantics. Consequently, these diagrams facilitate a clearer visual comprehension of…

Category Theory · Mathematics 2024-06-27 Vincent Abbott , Gioele Zardini

A constant-rate encoder--decoder pair is presented for a fairly large family of two-dimensional (2-D) constraints. Encoding and decoding is done in a row-by-row manner, and is sliding-block decodable. Essentially, the 2-D constraint is…

Information Theory · Computer Science 2008-08-06 Ido Tal , Tuvi Etzion , Ron M. Roth

I introduce a formalism for representing the syntax of recursively structured graph-like patterns. It does not use production rules, like a conventional graph grammar, but represents the syntactic structure in a more direct and declarative…

Formal Languages and Automata Theory · Computer Science 2025-04-25 Peter Fletcher

Graph problems are fundamentally challenging for large language models (LLMs). While LLMs excel at processing unstructured text, graph tasks require reasoning over explicit structure, permutation invariance, and computationally complex…

Machine Learning · Computer Science 2026-04-23 Angelo Zangari , Peyman Baghershahi , Sourav Medya