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We consider a non-attractive three state contact process on $\mathbb Z$ and prove that there exists a regime of survival as well as a regime of extinction. In more detail, the process can be regarded as an infection process in a dynamic…

Probability · Mathematics 2017-06-27 Marinus Gottschau , Markus Heydenreich , Kilian Matzke , Cristina Toninelli

We introduce and study the mutating contact process, a variant of the multitype contact process, where one type mutates at a constant rate to the other type. We prove that on $\mathbb{Z}$ a single mutant cannot survive while on…

Probability · Mathematics 2018-01-08 Idan Alter , Gideon Amir

We study a class of evolution models, where the breeding process involves an arbitrary exchangeable process, allowing for mutations to appear. The population size $n$ is fixed, hence after breeding, selection is applied. Individuals are…

Probability · Mathematics 2022-05-03 Daniela Bertacchi , Juri Lember , Fabio Zucca

This paper is concerned with a stochastic model for the spread of an SEIR (susceptible -> exposed (=latent) -> infective -> removed) epidemic with a contact tracing scheme, in which removed individuals may name some of their infectious…

Probability · Mathematics 2015-12-08 Frank G Ball , Edward S Knock , Philip D O'Neill

Discrete-time models are the traditional approach for capturing population dynamics of a host-parasitoid system. Recent work has introduced a semi-discrete framework for obtaining model update functions that connect host-parasitoid…

Populations and Evolution · Quantitative Biology 2015-03-09 Brooks Emerick , Abhyudai Singh

In an effort to effectively model observed patterns in the spatial configuration of individuals of multiple species in nature, we introduce the saturated pairwise interaction Gibbs point process. Its main strength lies in its ability to…

Methodology · Statistics 2023-02-27 Ian Flint , Nick Golding , Peter Vesk , Yan Wang , Aihua Xia

An organism that is newly introduced into an existing population has a survival probability that is dependent on both the population density of its environment and the competition it experiences with the members of that population.…

Populations and Evolution · Quantitative Biology 2024-12-17 Jason M. Gray , Rowan J. Barker-Clarke , Jacob G. Scott , Michael Hinczewski

One of the aims of systems biology is to build multiple layered and multiple scale models of living systems which can efficiently describe phenomena occurring at various level of resolution. Such models should consist of layers of various…

Dynamical Systems · Mathematics 2015-03-03 Jacek Banasiak , Aleksandra Falkiewicz , Proscovia Namayanja

Between-species coevolution, and in particular antagonistic host-parasite coevolution, is a major process shaping within-species diversity. In this paper we investigate the role of various stochastic processes affecting the outcome of the…

Populations and Evolution · Quantitative Biology 2020-12-08 Wolfgang Stephan , Aurélien Tellier

We consider an array of units each of which can be in one of three states. Unidirectional transitions between these states are governed by Markovian rate processes.The interactions between units occur through a dependence of the transition…

Statistical Mechanics · Physics 2015-06-22 Daniel Escaff , Italo'Ivo Lima Dias Pinto , Katja Lindenberg

The pair contact process (PCP) is a nonequilibrium stochastic model which, like the basic contact process (CP), exhibits a phase transition to an absorbing state. The two models belong to the directed percolation (DP) universality class,…

Statistical Mechanics · Physics 2015-05-27 F. L. Santos , Ronald Dickman , U. L. Fulco

A non-conserving zero-range process with extensive creation, annihilation and hopping rates is subjected to local resetting. The model is formulated on a large, fully-connected network of states. The states are equipped with a (bounded)…

Statistical Mechanics · Physics 2023-12-04 Pascal Grange

Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…

Statistical Mechanics · Physics 2021-11-17 Akriti Jindal , Anatoly B. Kolomeisky , Arvind Kumar Gupta

A symmetrical cubic discrete coupled logistic equation is proposed to model the symbiotic interaction of two isolated species. The coupling depends on the population size of both species and on a positive constant $\lambda$, named the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Ricardo Lopez-Ruiz , Daniele Fournier-Prunaret

It is known that the limiting behavior of the contact process strongly depends upon the geometry of the graph on which particles evolve: while the contact process on the regular lattice exhibits only two phases, the process on homogeneous…

Probability · Mathematics 2010-03-02 Nicolas Lanchier

We propose a stochastic model for evolution. Births and deaths of species occur with constant probabilities. Each new species is associated with a fitness sampled from the uniform distribution on [0,1]. Every time there is a death event…

Probability · Mathematics 2010-11-09 Herve Guiol , Fabio P. Machado , Rinaldo B. Schinazi

We study the evolution of cooperation in an interacting particle system with two types. The model we investigate is an extension of a two-type biased voter model. One type (called defector) has a (positive) bias $\alpha$ with respect to the…

Probability · Mathematics 2018-06-08 Peter Czuppon , Peter Pfaffelhuber

We propose a class of evolutionary models that involves an arbitrary exchangeable process as the breeding process and different selection schemes. In those models, a new genome is born according to the breeding process, and then a genome is…

Neural and Evolutionary Computing · Computer Science 2020-08-25 Jüri Lember , Chris Watkins

Both community ecology and conservation biology seek further understanding of factors governing the advance of an invasive species. We model biological invasion as an individual-based, stochastic process on a two-dimensional landscape. An…

Populations and Evolution · Quantitative Biology 2010-07-12 Lauren O'Malley , G. Korniss , Thomas Caraco

A complex contagion is an infectious process in which individuals may require multiple transmissions before changing state. These are used to model behaviors if an individual only adopts a particular behavior after perceiving a consensus…

Physics and Society · Physics 2015-06-29 Joel C. Miller