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The reliability of a phylogenetic inference method from genomic sequence data is ensured by its statistical consistency. Bayesian inference methods produce a sample of phylogenetic trees from the posterior distribution given sequence data.…

Metric Geometry · Mathematics 2016-06-10 Alex Gavryushkin , Alexei J. Drummond

Dimensionality reduction is a crucial first step for many unsupervised learning tasks including anomaly detection and clustering. Autoencoder is a popular mechanism to accomplish dimensionality reduction. In order to make dimensionality…

Machine Learning · Computer Science 2021-03-12 Imtiaz Ahmed , Travis Galoppo , Xia Hu , Yu Ding

The run time complexity of state-of-the-art inference algorithms in graph-based dependency parsing is super-linear in the number of input words (n). Recently, pruning algorithms for these models have shown to cut a large portion of the…

Computation and Language · Computer Science 2016-06-09 Effi Levi , Roi Reichart , Ari Rappoport

Despite rapid progress in scene segmentation in recent years, 3D segmentation methods are still limited when there is severe occlusion. The key challenge is estimating the segment boundaries of (partially) occluded objects, which are…

Robotics · Computer Science 2021-04-02 Andrew Price , Kun Huang , Dmitry Berenson

Consider the minimum spanning tree (MST) of the complete graph with n vertices, when edges are assigned independent random weights. Endow this tree with the graph distance renormalized by n^{1/3} and with the uniform measure on its…

Probability · Mathematics 2013-01-09 Louigi Addario-Berry , Nicolas Broutin , Christina Goldschmidt , Grégory Miermont

The problem considered is the following. Given a graph with edge weights satisfying the triangle inequality, and a degree bound for each vertex, compute a low-weight spanning tree such that the degree of each vertex is at most its specified…

Data Structures and Algorithms · Computer Science 2015-06-02 S. Fekete , S. Khuller , M. Klemmstein , B. Raghavachari , Neal E. Young

We study a new type of random minimum spanning trees. It is built on the complete graph where each vertex is given a weight, which is a positive real number. Then, each edge is given a capacity which is a random variable that only depends…

Probability · Mathematics 2020-12-04 Othmane Safsafi

Kesten and Lee [36] proved that the total length of a minimal spanning tree on certain random point configurations in $\mathbb{R}^d$ satisfies a central limit theorem. They also raised the question: how to make these results quantitative?…

Probability · Mathematics 2016-08-09 Sourav Chatterjee , Sanchayan Sen

We study the classic Euclidean Minimum Spanning Tree (MST) problem in the Massively Parallel Computation (MPC) model. Given a set $X \subset \mathbb{R}^d$ of $n$ points, the goal is to produce a spanning tree for $X$ with weight within a…

Data Structures and Algorithms · Computer Science 2023-08-02 Rajesh Jayaram , Vahab Mirrokni , Shyam Narayanan , Peilin Zhong

The fractal dimension of minimal spanning trees on percolation clusters is estimated for dimensions $d$ up to $d=5$. A robust analysis technique is developed for correlated data, as seen in such trees. This should be a robust method…

Disordered Systems and Neural Networks · Physics 2013-09-24 Sean M. Sweeney , A. Alan Middleton

Given a graph G, the {\em maximum internal spanning tree problem} (MIST for short) asks for computing a spanning tree T of G such that the number of internal vertices in T is maximized. MIST has possible applications in the design of…

Data Structures and Algorithms · Computer Science 2016-08-02 Zhi-Zhong Chen , Youta Harada , Lusheng Wang

An algorithm is proposed for constructing directed spanning forests of the minimum weight, in which the maximum possible degree of affinity between the minimum forests is preserved when the number of trees changes. The correctness of the…

Combinatorics · Mathematics 2025-02-18 Vasily Buslov

Sparse shortcuttings of trees -- equivalently, sparse 1-spanners for tree metrics with bounded hop-diameter -- have been studied extensively (under different names and settings), since the pioneering works of [Yao82, Cha87, AS87, BTS94],…

Data Structures and Algorithms · Computer Science 2025-12-22 Hung Le , Lazar Milenković , Shay Solomon , Cuong Than

In this work we consider the Metric Steiner Forest problem in the sublinear time model. Given a set $V$ of $n$ points in a metric space where distances are provided by means of query access to an $n\times n$ distance matrix, along with a…

Data Structures and Algorithms · Computer Science 2025-10-14 Sepideh Mahabadi , Mohammad Roghani , Jakub Tarnawski , Ali Vakilian

Internal measures that are used to assess the quality of a clustering usually take into account intra-group and/or inter-group criteria. There are many papers in the literature that propose algorithms with provable approximation guarantees…

Machine Learning · Computer Science 2024-01-17 Eduardo S. Laber , Lucas Murtinho

Minimum Spanning Trees are a well-studied subset of graph problems. While classical algorithms have existed to solve these problems for decades, new variations and application areas are constantly being discovered. When dealing with large…

Data Structures and Algorithms · Computer Science 2023-12-29 Arjun Bhalla

We study the local evolution of Prim's algorithm on large finite weighted graphs. When performed for $n$ steps, where $n$ is the size of the graph, Prim's algorithm will construct the minimal spanning tree (MST). We assume that our graphs…

Probability · Mathematics 2025-07-08 Benoît Corsini , Rowel Gündlach , Remco van der Hofstad

We study the {\em min-cost chain-constrained spanning-tree} (abbreviated \mcst) problem: find a min-cost spanning tree in a graph subject to degree constraints on a nested family of node sets. We devise the {\em first} polytime algorithm…

Data Structures and Algorithms · Computer Science 2016-05-12 Andre Linhares , Chaitanya Swamy

The quadratic minimum spanning tree problem and its variations such as the quadratic bottleneck spanning tree problem, the minimum spanning tree problem with conflict pair constraints, and the bottleneck spanning tree problem with conflict…

Data Structures and Algorithms · Computer Science 2016-03-16 Ante Ćustić , Ruonan Zhang , Abraham P. Punnen

Working with tree graphs is always easier than with loopy ones and spanning trees are the closest tree-like structures to a given graph. We find a correspondence between the solutions of random K-satisfiability problem and those of spanning…

Disordered Systems and Neural Networks · Physics 2009-11-11 A. Ramezanpour , S. Moghimi-Araghi
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