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One of the most important questions in matroid optimization is to find disjoint common bases of two matroids. The significance of the problem is well-illustrated by the long list of conjectures that can be formulated as special cases.…
In this work, we answer an open problem in the study of phylogenetic networks. Phylogenetic trees are rooted binary trees in which all edges are directed away from the root, whereas phylogenetic networks are rooted acyclic digraphs. For the…
We prove that every graph has a canonical tree of tree-decompositions that distinguishes all principal tangles (these include the ends and various kinds of large finite dense structures) efficiently. Here `trees of tree-decompositions' are…
Lists, multisets, and sets are well-known data structures whose usefulness is widely recognized in various areas of Computer Science. These data structures have been analyzed from an axiomatic point of view with a parametric approach in (*)…
The overlap graphs of subtrees in a tree (SOGs) generalise many other graphs classes with set representation characterisations. The complexity of recognising SOGs in open. The complexities of recognising many subclasses of SOGs are known.…
Generating trees are a useful technique in the enumeration of various combinatorial objects, particularly restricted permutations. Quite often the generating tree for the set of permutations avoiding a set of patterns requires infinitely…
Individualization-Refinement (IR) algorithms form the standard method and currently the only practical method for symmetry computations of graphs and combinatorial objects in general. Through backtracking, on each graph an IR-algorithm…
Deep neural networks have been proven powerful at processing perceptual data, such as images and audio. However for tabular data, tree-based models are more popular. A nice property of tree-based models is their natural interpretability. In…
We prove that given a fixed finite tree $P$, almost all trees contain $P$ as a subtree. Moreover, the inclusion can be made so that it induces an embedding of the corresponding (quantum) automorphism groups, thereby providing generic…
Property $(P)$, introduced in recent work and rooted in the classical theory of Parter vertices, concerns the existence of a nonsingular matrix $A\in S(G)$ for which every vertex of $G$ is a $P$-vertex. Previous investigations have fully…
A Supertree synthesizes the topologies of a set of phylogenetic trees carrying overlapping taxa set. In process, conflicts in the tree topologies are aimed to be resolved with the consensus clades. Such a problem is proved to be NP-hard.…
In evolutionary biology, networks are becoming increasingly used to represent evolutionary histories for species that have undergone non-treelike or reticulate evolution. Such networks are essentially directed acyclic graphs with a leaf set…
Efficient discovery of frequent itemsets in large datasets is a crucial task of data mining. In recent years, several approaches have been proposed for generating high utility patterns, they arise the problems of producing a large number of…
The structure of an evolving network contains information about its past. Extracting this information efficiently, however, is, in general, a difficult challenge. We formulate a fast and efficient method to estimate the most likely history…
Let $G=(V,E)$ and $H$ be two graphs. Packing problem is to find in $G$ the largest number of independent subgraphs each of which is isomorphic to $H$. Let $U\subset{V}$. If the graph $G-U$ has no subgraph isomorphic to $H$, $U$ is a cover…
We consider special cases of the two tree degree sequences problem. We show that if two tree degree sequences do not have common leaves then they always have edge-disjoint caterpillar realizations. By using a probabilistic method, we prove…
A forcing set $S$ in a combinatorial problem is a set of elements such that there is a unique solution that contains all the elements in $S$. An anti-forcing set is the symmetric concept: a set $S$ of elements is called an anti-forcing set…
A rooted acyclic digraph N with labelled leaves displays a tree T when there exists a way to select a unique parent of each hybrid vertex resulting in the tree T. Let Tr(N) denote the set of all trees displayed by the network N. In general,…
Trigraph list homomorphism problems (also known as list matrix partition problems) have generated recent interest, partly because there are concrete problems that are not known to be polynomial time solvable or NP-complete. Thus while…
Demand-aware communication networks are networks whose topology is optimized toward the traffic they need to serve. These networks have recently been enabled by novel optical communication technologies and are investigated intensively in…