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Related papers: Machine learning for metagenomics: methods and too…

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Machine learning approaches have seen considerable applications in human movement modeling, but remain limited for motor learning. Motor learning requires accounting for motor variability, and poses new challenges as the algorithms need to…

Machine Learning · Computer Science 2020-06-04 Baptiste Caramiaux , Jules Françoise , Wanyu Liu , Téo Sanchez , Frédéric Bevilacqua

The key to success in machine learning (ML) is the use of effective data representations. Traditionally, data representations were hand-crafted. Recently it has been demonstrated that, given sufficient data, deep neural networks can learn…

Machine Learning · Computer Science 2018-11-09 Ivan Olier , Oghenejokpeme I. Orhobor , Joaquin Vanschoren , Ross D. King

Clustering is a fundamental machine learning task which has been widely studied in the literature. Classic clustering methods follow the assumption that data are represented as features in a vectorized form through various representation…

Machine Learning · Computer Science 2022-06-16 Sheng Zhou , Hongjia Xu , Zhuonan Zheng , Jiawei Chen , Zhao li , Jiajun Bu , Jia Wu , Xin Wang , Wenwu Zhu , Martin Ester

Meta-learning empowers learning systems with the ability to acquire knowledge from multiple tasks, enabling faster adaptation and generalization to new tasks. This review provides a comprehensive technical overview of meta-learning,…

Machine Learning · Computer Science 2023-07-11 Anna Vettoruzzo , Mohamed-Rafik Bouguelia , Joaquin Vanschoren , Thorsteinn Rögnvaldsson , KC Santosh

New technologies have enabled the investigation of biology and human health at an unprecedented scale and in multiple dimensions. These dimensions include a myriad of properties describing genome, epigenome, transcriptome, microbiome,…

Quantitative Methods · Quantitative Biology 2018-10-22 Marinka Zitnik , Francis Nguyen , Bo Wang , Jure Leskovec , Anna Goldenberg , Michael M. Hoffman

Deep learning (DL) techniques have shown unprecedented success when applied to images, waveforms, and text. Generally, when the sample size ($N$) is much bigger than the number of features ($d$), DL often outperforms other machine learning…

Computer Vision and Pattern Recognition · Computer Science 2018-06-26 Thanh Hai Nguyen , Edi Prifti , Yann Chevaleyre , Nataliya Sokolovska , Jean-Daniel Zucker

Gene Regulatory Networks (GRNs) are intricate biological systems that control gene expression and regulation in response to environmental and developmental cues. Advances in computational biology, coupled with high throughput sequencing…

Machine Learning · Computer Science 2025-04-18 Akshata Hegde , Tom Nguyen , Jianlin Cheng

Machine learning has become pervasive in multiple domains, impacting a wide variety of applications, such as knowledge discovery and data mining, natural language processing, information retrieval, computer vision, social and health…

Artificial Intelligence · Computer Science 2017-05-09 Yangqiu Song , Dan Roth

In this modern technological era, categorization and ranking of research journals is gaining popularity among researchers and scientists. It plays a significant role for publication of their research findings in a quality journal. Although,…

Digital Libraries · Computer Science 2022-10-07 Rabia Shabbir Ranjha , Arshad Ali , Shahid Yousaf

Phylogenetic placement refers to a family of tools and methods to analyze, visualize, and interpret the tsunami of metagenomic sequencing data generated by high-throughput sequencing. Compared to alternative (e. g., similarity-based)…

Populations and Evolution · Quantitative Biology 2025-01-09 Lucas Czech , Alexandros Stamatakis , Micah Dunthorn , Pierre Barbera

In recent years, significant progress has been made in developing more accurate and efficient machine learning algorithms for segmentation of medical and natural images. In this review article, we highlight the imperative role of machine…

Image and Video Processing · Electrical Eng. & Systems 2019-11-07 Hyunseok Seo , Masoud Badiei Khuzani , Varun Vasudevan , Charles Huang , Hongyi Ren , Ruoxiu Xiao , Xiao Jia , Lei Xing

This paper presents a methodology for integrating machine learning techniques into metaheuristics for solving combinatorial optimization problems. Namely, we propose a general machine learning framework for neighbor generation in…

Optimization and Control · Mathematics 2022-12-23 Defeng Liu , Vincent Perreault , Alain Hertz , Andrea Lodi

Inclusion of high throughput technologies in the field of biology has generated massive amounts of biological data in the recent years. Now, transforming these huge volumes of data into knowledge is the primary challenge in computational…

Machine Learning · Computer Science 2021-12-06 Dibyendu Ghosh , Srija Chakraborty , Hariprasad Kodamana , Supriya Chakraborty

Lack of data on which to perform experimentation is a recurring issue in many areas of research, particularly in machine learning. The inability of most automated data mining techniques to be generalized to all types of data is inherently…

Machine Learning · Computer Science 2024-10-17 Gustavo Assunção , Paulo Menezes

Thanks to the increasing availability of genomics and other biomedical data, many machine learning approaches have been proposed for a wide range of therapeutic discovery and development tasks. In this survey, we review the literature on…

Machine Learning · Computer Science 2021-05-05 Kexin Huang , Cao Xiao , Lucas M. Glass , Cathy W. Critchlow , Greg Gibson , Jimeng Sun

Data pruning, or instance selection, is an important problem in machine learning especially in terms of nearest neighbour classifier. However, in data pruning which speeds up the prediction phase, there is an issue related to the speed and…

Machine Learning · Computer Science 2025-01-22 Marcin Blachnik , Piotr Ciepliński

There is a growing consensus that solutions to complex science and engineering problems require novel methodologies that are able to integrate traditional physics-based modeling approaches with state-of-the-art machine learning (ML)…

Computational Physics · Physics 2022-03-15 Jared Willard , Xiaowei Jia , Shaoming Xu , Michael Steinbach , Vipin Kumar

The emergence and continued reliance on the Internet and related technologies has resulted in the generation of large amounts of data that can be made available for analyses. However, humans do not possess the cognitive capabilities to…

Machine Learning · Computer Science 2021-01-12 MohammadNoor Injadat , Abdallah Moubayed , Ali Bou Nassif , Abdallah Shami

Metagenomic binning aims to cluster DNA fragments from mixed microbial samples into their respective genomes, a critical step for downstream analyses of microbial communities. Existing methods rely on deterministic representations, such as…

Machine Learning · Computer Science 2025-10-01 Abdulkadir Celikkanat , Andres R. Masegosa , Mads Albertsen , Thomas D. Nielsen

Classification is a fundamental task in machine learning. While conventional methods-such as binary, multiclass, and multi-label classification-are effective for simpler problems, they may not adequately address the complexities of some…