Related papers: The Complexity of Pattern Matching for $321$-Avoid…

In the matching interdiction problem, we are given an undirected graph with weights and interdiction costs on the edges and seek to remove a subset of the edges constrained to some budget, such that the weight of a maximum weight matching…

We study pattern matching problems on two major representations of uncertain sequences used in molecular biology: weighted sequences (also known as position weight matrices, PWM) and profiles (i.e., scoring matrices). In the simple version,…

Determining whether two STRIPS planning instances are isomorphic is the simplest form of comparison between planning instances. It is also a particular case of the problem concerned with finding an isomorphism between a planning instance…

Permutation Pattern Matching (PPM) is the problem of deciding for a given pair of permutations P and T whether the pattern P is contained in the text T. Bose, Buss and Lubiw showed that PPM is NP-complete. In view of this result, it is…

The transitive simultaneous conjugacy problem asks whether there exists a permutation $\tau \in S_n$ such that $b_j = \tau^{-1} a_j \tau$ holds for all $j = 1,2, \ldots, d$, where $a_1, a_2, \ldots, a_d$ and $b_1, b_2, \ldots, b_d$ are…

We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…

List colouring is an NP-complete decision problem even if the total number of colours is three. It is hard even on planar bipartite graphs. We give a polynomial-time algorithm for solving list colouring of permutation graphs with a bounded…

We characterize the complexity of the PATS problem for patterns of fixed height and color count in variants of the model where seed glues are either chosen or fixed and identical (so-called non-uniform and uniform variants). We prove that…

Given a text $T$ and a pattern $P$, the order-preserving matching problem is to find all substrings in $T$ which have the same relative orders as $P$. Order-preserving matching has been an active research area since it was introduced by…

Let $\Sigma$ and $\Pi$ be disjoint alphabets of respective size $\sigma$ and $\pi$. Two strings over $\Sigma \cup \Pi$ of equal length are said to parameterized match (p-match) if there is a bijection $f:\Sigma \cup \Pi \rightarrow \Sigma…

For a given permutation $\tau$, let $P_N^{\tau}$ be the uniform probability distribution on the set of $N$-element permutations $\sigma$ that avoid the pattern $\tau$. For $\tau=\mu_k:=123\cdots k$, we consider $P_N^{\mu_k}(\sigma_I=J)$…

We introduce a new string matching problem called order-preserving matching on numeric strings where a pattern matches a text if the text contains a substring whose relative orders coincide with those of the pattern. Order-preserving…

Indexing a set of strings for prefix search or membership queries is a fundamental task with many applications such as information retrieval or database systems. A classic abstract data type for modelling such an index is a trie. Due to the…

This paper examines a common extension of k-medoids and k-median clustering in the case of a two-dimensional Pareto front, as generated by bi-objective optimization approaches. A characterization of optimal clusters is provided, which…

Significance testing -- especially the paired-permutation test -- has played a vital role in developing NLP systems to provide confidence that the difference in performance between two systems (i.e., the test statistic) is not due to luck.…

We study geometric variations of the discriminating code problem. In the \emph{discrete version} of the problem, a finite set of points $P$ and a finite set of objects $S$ are given in $\mathbb{R}^d$. The objective is to choose a subset…

The classical pattern matching paradigm is that of seeking occurrences of one string - the pattern, in another - the text, where both strings are drawn from an alphabet set $\Sigma$. Assuming the text length is $n$ and the pattern length is…

Let $A$ and $B$ be two point sets in the plane of sizes $r$ and $n$ respectively (assume $r \leq n$), and let $k$ be a parameter. A matching between $A$ and $B$ is a family of pairs in $A \times B$ so that any point of $A \cup B$ appears in…

We introduce a new -as far as we know- problem, according to which we are asked to match sequences of two digits in matrices having entries among those two digits (but others too) and prove that this problem is NP-complete

The orbit problem is at the heart of symmetry reduction methods for model checking concurrent systems. It asks whether two given configurations in a concurrent system (represented as finite strings over some finite alphabet) are in the same…