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A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…

Data Structures and Algorithms · Computer Science 2023-01-24 Yosuke Mizutani , Annie Staker , Blair D. Sullivan

In the pairwise weighted spanner problem, the input consists of an $n$-vertex-directed graph, where each edge is assigned a cost and a length. Given $k$ vertex pairs and a distance constraint for each pair, the goal is to find a…

Data Structures and Algorithms · Computer Science 2023-07-10 Elena Grigorescu , Nithish Kumar , Young-San Lin

A set $D\subseteq V$ of a graph $G=(V,E)$ is called a neighborhood total dominating set of $G$ if $D$ is a dominating set and the subgraph of $G$ induced by the open neighborhood of $D$ has no isolated vertex. Given a graph $G$,…

Discrete Mathematics · Computer Science 2021-11-18 Anupriya Jha , D. Pradhan , S. Banerjee

We consider a connected undirected graph $G(n,m)$ with $n$ nodes and $m$ edges. A $k$-dominating set $D$ in $G$ is a set of nodes having the property that every node in $G$ is at most $k$ edges away from at least one node in $D$. Finding a…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 L. D. Penso , V. C. Barbosa

The Weighted $\mathcal{F}$-Vertex Deletion for a class ${\cal F}$ of graphs asks, weighted graph $G$, for a minimum weight vertex set $S$ such that $G-S\in{\cal F}.$ The case when ${\cal F}$ is minor-closed and excludes some graph as a…

Data Structures and Algorithms · Computer Science 2025-01-09 Eun Jung Kim , Euiwoong Lee , Dimitrios M. Thilikos

The weak saturation number $\mathrm{wsat}(n,F)$ is the minimum number of edges in a graph on $n$ vertices such that all the missing edges can be activated sequentially so that each new edge creates a copy of $F$. A usual approach to prove a…

Combinatorics · Mathematics 2023-05-26 Nikolai Terekhov , Maksim Zhukovskii

Several important tasks in medical image analysis can be stated in the form of an optimization problem whose feasible solutions are connected subgraphs. Examples include the reconstruction of neural or vascular structures under…

Computer Vision and Pattern Recognition · Computer Science 2016-10-24 Markus Rempfler , Bjoern Andres , Bjoern H. Menze

Minimum Label Cut (or Hedge Connectivity) problem is defined as follows: given an undirected graph $G=(V, E)$ with $n$ vertices and $m$ edges, in which, each edge is labeled (with one or multiple labels) from a label set $L=\{\ell_1,\ell_2,…

Data Structures and Algorithms · Computer Science 2019-08-21 Rupei Xu , András Faragó

Given an undirected graph $G$, the Densest $k$-subgraph problem (DkS) asks to compute a set $S \subset V$ of cardinality $\left\lvert S\right\rvert \leq k$ such that the weight of edges inside $S$ is maximized. This is a fundamental NP-hard…

Data Structures and Algorithms · Computer Science 2020-11-10 Yash Khanna , Anand Louis

We consider the minimum vertex cover problem in hypergraphs in which every hyperedge has size k (also known as minimum hitting set problem, or minimum set cover with element frequency k). Simple algorithms exist that provide…

Data Structures and Algorithms · Computer Science 2010-12-14 Jean Cardinal , Marek Karpinski , Richard Schmied , Claus Viehmann

We consider two optimization problems in planar graphs. In Maximum Weight Independent Set of Objects we are given a graph $G$ and a family $\mathcal{D}$ of objects, each being a connected subgraph of $G$ with a prescribed weight, and the…

Data Structures and Algorithms · Computer Science 2018-07-23 Michał Pilipczuk , Erik Jan van Leeuwen , Andreas Wiese

Networks are largely used for modelling and analysing data and relations among them. Recently, it has been shown that the use of a single network may not be the optimal choice, since a single network may misses some aspects. Consequently,…

Data Structures and Algorithms · Computer Science 2020-08-05 Riccardo Dondi , Pietro Hiram Guzzi , Mohammad Mehdi Hosseinzadeh

We study the problem of finding a minimum weight connected subgraph spanning at least $k$ vertices on planar, node-weighted graphs. We give a $(4+\eps)$-approximation algorithm for this problem. We achieve this by utilizing the recent LMP…

Data Structures and Algorithms · Computer Science 2018-05-09 Jarosław Byrka , Mateusz Lewandowski , Joachim Spoerhase

For a graph $G=(V,E)$ with no isolated vertices, a set $D\subseteq V$ is called a semipaired dominating set of G if $(i)$ $D$ is a dominating set of $G$, and $(ii)$ $D$ can be partitioned into two element subsets such that the vertices in…

Discrete Mathematics · Computer Science 2019-04-02 Michael A. Henning , Arti Pandey , Vikash Tripathi

For a graph $G=(V,E)$, a set $D \subseteq V$ is called a semitotal dominating set of $G$ if $D$ is a dominating set of $G$, and every vertex in $D$ is within distance~$2$ of another vertex of~$D$. The \textsc{Minimum Semitotal Domination}…

Discrete Mathematics · Computer Science 2017-11-30 Michael A. Henning , Arti Pandey

We study the Maximum Cardinality Matching (MCM) and the Maximum Weight Matching (MWM) problems, on trees and on some special classes of graphs, in the Online Preemptive and the Incremental Dynamic Graph models. In the {\em Online…

Data Structures and Algorithms · Computer Science 2018-01-23 Sumedh Tirodkar , Sundar Vishwanathan

Retraction note: After posting the manuscript on arXiv, we were informed by Erik Jan van Leeuwen that both results were known and they appeared in his thesis[vL09]. A PTAS for MDS is at Theorem 6.3.21 on page 79 and A PTAS for MCDS is at…

Data Structures and Algorithms · Computer Science 2021-09-20 Jittat Fakcharoenphol , Pattara Sukprasert

We study the scaling behavior of the size of minimum dominating set (MDS) in scale-free networks, with respect to network size $N$ and power-law exponent $\gamma$, while keeping the average degree fixed. We study ensembles generated by…

Physics and Society · Physics 2013-09-13 F. Molnar , S. Sreenivasan , B. K. Szymanski , G. Korniss

In this note we describe an application of low-high orders in fault-tolerant network design. Baswana et al. [DISC 2015] study the following reachability problem. We are given a flow graph $G = (V, A)$ with start vertex $s$, and a spanning…

Data Structures and Algorithms · Computer Science 2015-11-25 Loukas Georgiadis , Robert E. Tarjan

A dominating set in a graph $G$ is a subset of vertices $D$ such that every vertex in $V\setminus D$ is a neighbor of some vertex of $D$. The domination number of $G$ is the minimum size of a dominating set of $G$ and it is denoted by…

Discrete Mathematics · Computer Science 2018-03-16 P. Sharifani , M. R. Hooshmandasl , M. Alambardar Meybodi