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A crisp survey is given of chemical reaction networks from the perspective of general nonlinear network dynamics, in particular of consensus dynamics. It is shown how by starting from the complex-balanced assumption the reaction dynamics…

Dynamical Systems · Mathematics 2015-02-10 Arjan van der Schaft , Shodhan Rao , Bayu Jayawardhana

Many networked systems such as electric networks, the brain, and social networks of opinion dynamics are known to obey conservation laws. Examples of this phenomenon include the Kirchoff laws in electric networks and opinion consensus in…

Machine Learning · Statistics 2022-06-16 Anirudh Rayas , Rajasekhar Anguluri , Gautam Dasarathy

In this paper we present a unifying geometric and compositional framework for modeling complex physical network dynamics as port-Hamiltonian systems on open graphs. Basic idea is to associate with the incidence matrix of the graph a Dirac…

Optimization and Control · Mathematics 2012-09-07 A. J. van der Schaft , B. M. Maschke

Complex numbers define the relationship between entities in many situations. A canonical example would be the off-diagonal terms in a Hamiltonian matrix in quantum physics. Recent years have seen an increasing interest to extend the tools…

Social and Information Networks · Computer Science 2023-07-06 Yu Tian , Renaud Lambiotte

Networks are essential models in many applications such as information technology, chemistry, power systems, transportation, neuroscience, and social sciences. In light of such broad applicability, a general theory of dynamical systems on…

Analysis of PDEs · Mathematics 2024-02-06 Alexandre M. Bayen , Alexander Keimer , Nils Müller

Control theory often takes the mathematical model of the to-be-control-led system for granted. In contrast, port-Hamiltonian systems theory bridges the gap between modelling and control for physical systems. It provides a unified framework…

Optimization and Control · Mathematics 2024-12-30 Arjan van der Schaft

In this paper, we consider the robustness of a basic model of a dynamical distribution network. In the first problem, i.e., optimal weight allocation, we minimize the H-inf- norm of the dynamical distribution network subject to allocation…

Optimization and Control · Mathematics 2018-05-03 Jieqiang Wei , Alexander Johansson , Henrik Sandberg , Karl H. Johansson , Jie Chen

We consider a basic model of a dynamical distribution network, modeled as a directed graph with storage variables corresponding to every vertex and flow inputs corresponding to every edge, subject to unknown but constant inflows and…

Optimization and Control · Mathematics 2013-03-20 J. Wei , A. J. van der Schaft

Physical networks are made of nodes and links that are physical objects embedded in a geometric space. Understanding how the mutual volume exclusion between these elements affects the structure and function of physical networks calls for a…

Statistical Mechanics · Physics 2024-06-14 Gábor Pete , Ádám Timár , Sigurdur Örn Stefánsson , Ivan Bonamassa , Márton Pósfai

Networked systems that occur in various domains, such as the power grid, the brain, and opinion networks, are known to obey conservation laws. For instance, electric networks obey Kirchoff's laws, and social networks display opinion…

Systems and Control · Electrical Eng. & Systems 2023-02-02 Anirudh Rayas , Rajasekhar Anguluri , Jiajun Cheng , Gautam Dasarathy

Many physical systems--from mechanical lattices and electrical circuits to biological tissues and architected metamaterials--can be understood as networks transmitting physical quantities. We present a unified mathematical framework for…

Soft Condensed Matter · Physics 2025-08-07 José M. Ortiz-Tavárez , William Stephenson , Xiaoming Mao

In this paper we derive a compact mathematical formulation describing the dynamics of chemical reaction networks that are complex-balanced and are governed by mass action kinetics. The formulation is based on the graph of (substrate and…

Dynamical Systems · Mathematics 2012-12-12 Shodhan Rao , Arjan van der Schaft , Bayu Jayawardhana

This paper investigates a distributed formation tracking control law for large-scale networks of mechanical systems. In particular, the formation network is represented by a directed communication graph with leaders and followers, where…

Systems and Control · Electrical Eng. & Systems 2022-03-18 N. Javanmardi , P. Borja , M. J. Yazdanpanah , J. M. A. Scherpen

Using local detailed balance we rewrite the Kirchhoff formula for stationary distribution of Markov jump processes in terms of a physically interpretable tree-ensemble. We use that arborification of path-space integration to derive a…

Statistical Mechanics · Physics 2022-10-17 Faezeh Khodabandehlou , Christian Maes , Karel Netočný

Here we present the entropic dynamics formalism for networks. That is, a framework for the dynamics of graphs meant to represent a network derived from the principle of maximum entropy and the rate of transition is obtained taking into…

Physics and Society · Physics 2021-04-29 Felipe Xavier Costa , Pedro Pessoa

We consider a basic model of a dynamical distribution network, modeled as a directed graph with storage variables corresponding to every vertex and flow inputs corresponding to every edge, subject to unknown but constant inflows and…

Optimization and Control · Mathematics 2014-03-21 Jieqiang Wei , Arjan J. van der Schaft

Kirchhoff's matrix tree theorem is a well-known result that gives a formula for the number of spanning trees in a finite, connected graph in terms of the graph Laplacian matrix. A closely related result is Wilson's algorithm for putting the…

Probability · Mathematics 2013-06-11 Michael J. Kozdron , Larissa M. Richards , Daniel W. Stroock

We rigorously derive the dense graph limit of a discrete model describing the formation of biological transportation networks. The discrete model, defined on undirected graphs with pressure-driven flows, incorporates a convex energy…

Optimization and Control · Mathematics 2026-01-23 Nuno J. Alves , Jan Haskovec

We present an elementary proof of a generalization of Kirchoff's matrix tree theorem to directed, weighted graphs. The proof is based on a specific factorization of the Laplacian matrices associated to the graphs, which only involves the…

Combinatorics · Mathematics 2019-04-30 Patrick De Leenheer

Restrictions of incidence-preserving path maps produce an oriented hypergraphic All Minors Matrix-tree Theorems for Laplacian and adjacency matrices. The images of these maps produce a locally signed graphic, incidence generalization, of…

Combinatorics · Mathematics 2020-09-29 Ellen Robinson , Lucas J. Rusnak , Martin Schmidt , Piyush Shroff
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