Related papers: Subtree Isomorphism Revisited
Given a simplicial complex with $n$ simplices, we consider the Connected Subsurface Recognition (c-SR) problem of finding a subcomplex that is homeomorphic to a given connected surface with a fixed boundary. We also study the related…
Decision trees are a popular technique in statistical data classification. They recursively partition the feature space into disjoint sub-regions until each sub-region becomes homogeneous with respect to a particular class. The basic…
Building trees to represent or to fit distances is a critical component of phylogenetic analysis, metric embeddings, approximation algorithms, geometric graph neural nets, and the analysis of hierarchical data. Much of the previous…
We consider the problem of finding the smallest graph that contains two input trees each with at most $n$ vertices preserving their distances. In other words, we look for an isometric-universal graph with the minimum number of vertices for…
The problem of determining whether a graph $G$ contains another graph $H$ as a minor, referred to as the minor containment problem, is a fundamental problem in the field of graph algorithms. While it is NP-complete when $G$ and $H$ are…
While obtaining optimal algorithms for the most important problems in the LOCAL model has been one of the central goals in the area of distributed algorithms since its infancy, tight complexity bounds are elusive for many problems even when…
Several structure-learning algorithms for staged trees, asymmetric extensions of Bayesian networks, have been proposed. However, these either do not scale efficiently as the number of variables considered increases, a priori restrict the…
The width measure \emph{treedepth}, also known as vertex ranking, centered coloring and elimination tree height, is a well-established notion which has recently seen a resurgence of interest. We present an algorithm which---given as input…
We present subquadratic algorithms in the algebraic decision-tree model for several \textsc{3Sum}-hard geometric problems, all of which can be reduced to the following question: Given two sets $A$, $B$, each consisting of $n$ pairwise…
The Strong Exponential Time Hypothesis and the OV-conjecture are two popular hardness assumptions used to prove a plethora of lower bounds, especially in the realm of polynomial-time algorithms. The OV-conjecture in moderate dimension…
The maximum/minimum bisection problems are, given an edge-weighted graph, to find a bipartition of the vertex set into two sets whose sizes differ by at most one, such that the total weight of edges between the two sets is…
(Induced) Subgraph Isomorphism and Maximum Common (Induced) Subgraph are fundamental problems in graph pattern matching and similarity computation. In graphs derived from time-series data or protein structures, a natural total ordering of…
The computational complexity of the isomorphism problem for regular trees, regular linear orders, and regular words is analyzed. A tree is regular if it is isomorphic to the prefix order on a regular language. In case regular languages are…
Many of the distributed localization algorithms are based on relaxed optimization formulations of the localization problem. These algorithms commonly rely on first-order optimization methods, and hence may require many iterations or…
Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
We prove that there is a randomized polynomial-time algorithm that given an edge-weighted graph $G$ excluding a fixed-minor $Q$ on $n$ vertices and an accuracy parameter $\varepsilon>0$, constructs an edge-weighted graph~$H$ and an…
One of the important features of an interconnection network is its ability to efficiently simulate programs or parallel algorithms written for other architectures. Such a simulation problem can be mathematically formulated as a graph…
The supertree problem asking for a tree displaying a set of consistent input trees has been largely considered for the reconstruction of species trees. Here, we rather explore this framework for the sake of reconstructing a gene tree from a…
Treewidth is a parameter that emerged from the study of minor closed classes of graphs (i.e. classes closed under vertex and edge deletion, and edge contraction). It in some sense describes the global structure of a graph. Roughly, a graph…
The edit distance between two rooted ordered trees with $n$ nodes labeled from an alphabet~$\Sigma$ is the minimum cost of transforming one tree into the other by a sequence of elementary operations consisting of deleting and relabeling…