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Performing a computer experiment can be viewed as observing a mapping between the model parameters and the corresponding model outputs predicted by the computer model. In view of this, experimental design for computer experiments can be…

Computation · Statistics 2017-12-29 Chang-Han Rhee , Enlu Zhou , Peng Qiu

Biological nervous systems exhibit astonishing complexity .Neuroscientists aim to capture this com- plexity by modeling and simulation of biological processes. Often very comple xm odels are nec- essary to depict the processes, which makes…

Software Engineering · Computer Science 2016-06-10 Dimitri Plotnikov , Bernhard Rumpe , Inga Blundell , Tammo Ippen , Jochen Martin Eppler , Abgail Morrison

Knee orthotic devices are widely proposed by physicians and medical practitioners for preventive or therapeutic objectives in relation with their effects, usually known as to stabilize joint or restrict ranges of motion. This study focuses…

Medical Physics · Physics 2014-09-22 Baptiste Pierrat , Jérôme Molimard , Paul Calmels , Laurent Navarro , Stéphane Avril

In a many body system, constituents interact with each other, forming a recursive pattern of interaction and giving rise to many interesting phenomena. Based upon concepts of the modern many body theory, a model for a generic many body…

Biological Physics · Physics 2007-05-23 Zhen Ye

An efficient, generalizable physical simulator with universal uncertainty estimates has wide applications in robot state estimation, planning, and control. In this paper, we build such a simulator for two scenarios, planar pushing and ball…

We propose a simple mathematical model to describe the mechanical relaxation of cells within a curved epithelial tissue layer represented by an arbitrary curve in two-dimensional space. This model generalises previous one-dimensional models…

Cellular Automata and Lattice Gases · Physics 2025-01-09 Pascal R. Buenzli , Shahak Kuba , Ryan J. Murphy , Matthew J. Simpson

Neurofeedback is a form of brain training in which subjects are fed back information about some measure of their brain activity which they are instructed to modify in a way thought to be functionally advantageous. Over the last twenty…

Neurons and Cognition · Quantitative Biology 2018-05-15 David Papo

Using numerical simulations, we characterized the behavior of an elastic membrane immersed in an active fluid. Our findings reveal a nontrivial folding and re-expansion of the membrane that is controlled by the interplay of its resistance…

Soft Condensed Matter · Physics 2015-07-24 S. A. Mallory , C. Valeriani , A. Cacciuto

Experiments investigating particles floating on a randomly stirred fluid show regions of very low density, which are not well understood. We introduce a simplified model for understanding sparsely occupied regions of the phase space of…

Chaotic Dynamics · Physics 2022-02-28 Bartomeu Cucurull , Marc Pradas , Michael Wilkinson

Tungsten microneedles are currently used to insert neural electrodes into living peripheral nerves. However, the biomechanics underlying these procedures is not yet well characterized. For this reason, the aim of this work was to model the…

Soft Condensed Matter · Physics 2013-08-05 Pier Nicola Sergi , Winnie Jensen , Silvestro Micera , Ken Yoshida

High-dimensional compartmental dynamical systems have been introduced to model brain metabolism. In this article, an approach is proposed to their mathematical analysis. Reductions of these models are obtained by replacing several…

Dynamical Systems · Mathematics 2013-08-05 Marion Lahutte-Auboin , Robert Costalat , Jean-Pierre Françoise , Remy Guillevin

Active sensing is traditionally defined as the expenditure of energy, typically in the form of movement, for obtaining information. Here, we propose that the combination of reliance on adaptive sensors, the linkage between movement and…

Neurons and Cognition · Quantitative Biology 2026-05-25 Andrew Lamperski , Debojyoti Biswas , Eric S. Fortune , John Guckenheimer , Kathleen Hoffman , Noah J. Cowan

Classical and thermodynamically consistent fractional Burgers models are examined in creep and stress relaxation tests. Using the Laplace transform method, the creep compliance and relaxation modulus are obtained in integral form, that…

Classical Physics · Physics 2019-12-03 Aleksandar S. Okuka , Dušan Zorica

Mitochondrial networks exhibit a variety of complex behaviors, including coordinated cell-wide oscillations of energy states as well as a phase transition (depolarization) in response to oxidative stress. Since functional and structural…

Stylized models of the neurodynamics that underpin sensory motor control in animals are proposed and studied. The voluntary motions of animals are typically initiated by high level intentions created in the primary cortex through a…

Systems and Control · Electrical Eng. & Systems 2021-10-12 John Baillieul , Zexin Sun

Background The development of a simulation model of full body reaching tasks that can predict endeffector trajectories and joint excursions consistent with experimental data is a non-trivial task. Because of the kinematic redundancy…

Systems and Control · Computer Science 2011-08-10 Daohang Sha , James S Thomas

The quantitative understanding of membranes is still rooted in work performed in the 1970s by Helfrich and others, concerning amphiphilic bilayers. However, most biological membranes contain a wide variety of nonamphiphilic molecules too.…

Soft Condensed Matter · Physics 2014-06-10 Richard G. Morris

Real cortical tissue curves and folds according to experimental data. However, our current simulations only use unfolded cortical layers. This project extends the cortical slice model in order to be able to specify arbitrary curvatures to…

Neurons and Cognition · Quantitative Biology 2014-05-15 Jintao Long , Richard Tomsett , Marcus Kaiser

Flexible reconfiguration of human brain networks supports cognitive flexibility and learning. However, modulating flexibility to enhance learning requires an understanding of the relationship between flexibility and brain state. In an…

Neurons and Cognition · Quantitative Biology 2016-01-29 Richard F. Betzel , Theodore D. Satterthwaite , Joshua I. Gold , Danielle S. Bassett

A new mechanism, the forget-remember mechanism, is proposed for studying the spreading process in 2-state model. Such mechanism exhibits behaviors of message spreading influenced by some kinds of functions about time and history caring…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 J. Gu , X. Cai