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Understanding the mechanisms of species coexistence has always been a fundamental topic in ecology. Classical theory predicts that interspecific competition may select for traits that stabilize niche differences, although recent work shows…

Populations and Evolution · Quantitative Biology 2023-05-16 José F. Fontanari , Margarida Matos , Mauro Santos

The observation that phenotypic variability is ubiquitous in isogenic populations has led to a multitude of experimental and theoretical studies seeking to probe the causes and consequences of this variability. Whether it be in the context…

Populations and Evolution · Quantitative Biology 2022-02-18 Ethan Levien , Jiseon Min , Jane Kondev , Ariel Amir

Intraspecific trait variation has been increasingly recognized as an important factor in determining species interaction and diversity. Eco-evolutionary models have studied the distribution of trait values within a population that changes…

Populations and Evolution · Quantitative Biology 2023-10-12 Zachary Jackson , BingKan Xue

Using a network representation for real soil samples and mathematical models for microbial spread, we show that the structural heterogeneity of the soil habitat may have a very significant influence on the size of microbial invasions of the…

Populations and Evolution · Quantitative Biology 2012-09-19 F. J. Perez-Reche , S. N. Taraskin , W. Otten , M. P. Viana , L. da F. Costa , C. A. Gilligan

In evolutionary dynamics, a key measure of a mutant trait's success is the probability that it takes over the population given some initial mutant-appearance distribution. This "fixation probability" is difficult to compute in general, as…

Populations and Evolution · Quantitative Biology 2022-02-18 Alex McAvoy , Benjamin Allen

Different evolutionary models are known to make disparate predictions for the success of an invading mutant in some situations. For example, some evolutionary mechanics lead to amplification of selection in structured populations, while…

Populations and Evolution · Quantitative Biology 2020-07-01 Francisco Herrerías-Azcué , Vicente Pérez-Muñuzuri , Tobias Galla

Evolution occurs in populations of reproducing individuals. It is well known that population structure can affect evolutionary dynamics. Traditionally, natural selection is studied between mutants that differ in reproductive rate, but are…

Populations and Evolution · Quantitative Biology 2021-11-23 Josef Tkadlec , Kamran Kaveh , Krishnendu Chatterjee , Martin A. Nowak

Natural ecosystems are characterized by striking diversity of form and functions and yet exhibit deep symmetries emerging across scales of space, time and organizational complexity. Species-area relationships and species-abundance…

Phenotypic plasticity is a key factor in driving the evolution of species in the predator-prey interaction. The natural environment is replete with phenotypic plasticity, which is the source of inducible defences against predators,…

Populations and Evolution · Quantitative Biology 2024-11-19 Sangeeta Saha , Swadesh Pal , Roderick Melnik

Spatial environmental variation can either amplify or suppress the fixation of beneficial mutants in structured populations, yet the interplay of ecological factors and spatial structure in determining which outcome occurs remains…

Populations and Evolution · Quantitative Biology 2026-05-07 Hossein Nemati , Kamran Kaveh , Jakub Svoboda , Mohammad Reza Ejtehadi , Krishnendu Chatterjee

Traveling fronts describe the transition between two alternative states in a great number of physical and biological systems. Examples include the spread of beneficial mutations, chemical reactions, and the invasions by foreign species. In…

Statistical Mechanics · Physics 2020-07-14 Ching-Hao Wang , Sakib Matin , Ashish B. George , Kirill S. Korolev

Mitochondrial and nuclear genomes must be co-adapted to ensure proper cellular respiration and energy production. Mito-nuclear incompatibility reduces individual fitness and induces hybrid infertility, suggesting a possible role in…

Populations and Evolution · Quantitative Biology 2022-10-12 Débora Princepe , Marcus A. M. de Aguiar , Joshua B. Plotkin

A tumor can be thought of as an ecosystem, which critically means that we cannot just consider it as a collection of mutated cells but more as a complex system of many interacting cellular and microenvironmental elements. At its simplest, a…

Populations and Evolution · Quantitative Biology 2013-05-03 Jill Gallaher , Alexander R. A. Anderson

In the context of multistability driven diseases, like cancer, spatiotemporal plasticity plays a significant role to achieve a spectrum of phenotypic variations. The interplay between gene regulatory networks and environmental factors, such…

Populations and Evolution · Quantitative Biology 2026-02-17 Ranu Kundu , Priya Chakraborty , Sohini Guin , Shyam Sundar Poriah , Sayantari Ghosh

In this paper, we study a special case of the invasion fitness matrix in a replicator equation: the invader-driven case. In this replicator, each species is defined by its unique active invasiveness potential (initial growth rate when…

Dynamical Systems · Mathematics 2025-10-10 Thi Minh Thao Le , Marina Garcia-Romero , Joao Duarte Âlcantara Galvao , Sten Madec , Erida Gjini

Effects of externally imposed periodic changes in the environment on population dynamics are studied with the help of a simple model. The environmental changes are represented by the temporal and spatial dependence of the competition terms…

Adaptation and Self-Organizing Systems · Physics 2009-11-10 M. Ballard , V. M. Kenkre , M. N. Kuperman

We introduce and analyze a within-host dynamical model of the coevolution between rapidly mutating pathogens and the adaptive immune response. Pathogen mutation and a homeostatic constraint on lymphocytes both play a role in allowing the…

Populations and Evolution · Quantitative Biology 2014-08-06 Kimberly J. Schlesinger , Sean P. Stromberg , Jean M. Carlson

The aim of this paper is to discuss the role of robustness and diversity in population dynamics in particular to some properties of the multi-step from healthy tissue to fully malignant tumours. Recent evidence shows that diversity within…

Populations and Evolution · Quantitative Biology 2010-03-12 Tomas Alarcon , Henrik Jeldtoft Jensen

The goal of this article is to contribute towards the conceptual and quantitative understanding of the evolutionary benefits for (microbial) populations to maintain a seed bank (consisting of dormant individuals) when facing fluctuating…

Probability · Mathematics 2024-07-02 Jochen Blath , Felix Hermann , Martin Slowik

The microbiome constitutes a complex microbial ecology of interacting components that regulates important pathways in the host. Measurements of microbial abundances are key to learning the intricate network of interactions amongst microbes.…

Methodology · Statistics 2024-06-17 Veronica Vinciotti , Ernst Wit , Francisco Richter
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