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Most complex networks serve as conduits for various dynamical processes, ranging from mass transfer by chemical reactions in the cell to packet transfer on the Internet. We collected data on the time dependent activity of five natural and…

Disordered Systems and Neural Networks · Physics 2009-11-10 M. Argollo de Menezes , A-L. Barabasi

Signal transduction within biological cells is governed by networks of interacting proteins. Communication between these proteins is mediated by signaling molecules which bind to receptors and induce stochastic transitions between different…

Molecular Networks · Quantitative Biology 2017-04-05 Gonzalo Hernandez-Hernandez , Jesse Myers , Enric Alvarez-Lacalle , Yohannes Shiferaw

This article examines the impact of Hamiltonian dynamics on the interaction graph of Boolean networks. Three types of dynamics are considered: maximum height, Hamiltonian cycle, and an intermediate dynamic between these two. The study…

Discrete Mathematics · Computer Science 2026-05-14 Arturo Zapata-Cortés , Julio Aracena

Stochastic reaction networks are mathematical models frequently used in, but not limited to, biochemistry. These models are continuous-time Markov chains whose transition rates depend on certain parameters called rate constants, which…

Probability · Mathematics 2025-08-14 Daniele Cappelletti , Aidan Howells , Chuang Xu

We provide a rigorous solution to the problem of constructing a structural evolution for a network of coupled identical dynamical units that switches between specified topologies without constraints on their structure. The evolution of the…

Physics and Society · Physics 2016-01-20 Charo I. del Genio , Miguel Romance , Regino Criado , Stefano Boccaletti

We study the phenomenon of localization and delocalization in a circuit-QED network with connectivity varying from finite-range to all-to-all coupling. We find a fascinating interplay between interactions and connectivity. In particular, we…

Quantum Physics · Physics 2022-02-25 Tamoghna Ray , Amit Dey , Manas Kulkarni

In the study of randomly connected neural network dynamics there is a phase transition from a `simple' state with few equilibria to a `complex' state characterised by the number of equilibria growing exponentially with the neuron…

Disordered Systems and Neural Networks · Physics 2020-06-24 J. R. Ipsen , A. D. H. Peterson

Dynamical networks are powerful tools for modeling a broad range of complex systems, including financial markets, brains, and ecosystems. They encode how the basic elements (nodes) of these systems interact altogether (via links) and evolve…

Physics and Society · Physics 2019-03-13 Edward Laurence , Nicolas Doyon , Louis J Dubé , Patrick Desrosiers

Modularity structures are common in various social and biological networks. However, its dynamical origin remains an open question. In this work, we set up a dynamical model describing the evolution of a social network. Based on the…

Physics and Society · Physics 2011-08-19 Menghui Li , Shuguang Guan , Choy-Heng Lai

Diverse biological networks exhibit universal features distinguished from those of random networks, calling much attention to their origins and implications. Here we propose a minimal evolution model of Boolean regulatory networks, which…

Molecular Networks · Quantitative Biology 2014-11-26 Deok-Sun Lee

We study expanding circle maps interacting in a heterogeneous random network. Heterogeneity means that some nodes in the network are massively connected, while the remaining nodes are only poorly connected. We provide a probabilistic…

Dynamical Systems · Mathematics 2013-08-27 Tiago Pereira , Sebastian van Strien , Jeroen S. W. Lamb

We study a system of coupled phase oscillators near a saddle-node on an invariant circle bifurcation and driven by random intrinsic frequencies. Under the variation of control parameters, the system undergoes a phase transition changing the…

Adaptation and Self-Organizing Systems · Physics 2022-08-18 Georgi S. Medvedev , Matthew S. Mizuhara , Andrew Phillips

We consider heteroclinic networks between $n \in \mathbb{N}$ nodes where the only connections are those linking each node to its two subsequent neighbouring ones. Using a construction method where all nodes are placed in a single…

Dynamical Systems · Mathematics 2023-09-07 Sofia B. S. D. Castro , Alexander Lohse

Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg

Characterizing the in uence of network properties on the global emerging behavior of interacting elements constitutes a central question in many areas, from physical to social sciences. In this article we study a primary model of disordered…

Disordered Systems and Neural Networks · Physics 2013-10-08 Luis Carlos Garcidel Molino , Khashayar Pakdaman , Jonathan Touboul , Gilles Wainrib

Dynamical systems containing heteroclinic cycles and networks can be invoked as models of intransitive competition between three or more species. When populations are assumed to be well-mixed, a system of ordinary differential equations…

Dynamical Systems · Mathematics 2023-11-01 David C Groothuizen Dijkema , Claire M Postlethwaite

Network representations are useful for describing the structure of a large variety of complex systems. Although most studies of real-world networks suppose that nodes are connected by only a single type of edge, most natural and engineered…

Physics and Society · Physics 2020-08-05 Rubén J. Sánchez-García , Emanuele Cozzo , Yamir Moreno

The dynamics of a two-state system whose energies undergo a real crossing at some instant of time is studied. At this instant, both the coupling and the detuning vanish simultaneously, which leads to an exact degeneracy of the eigenenergies…

Quantum Physics · Physics 2015-05-05 Benedetto D. Militello , Nikolay V. Vitanov

In the framework of the generalized Lotka Volterra model, solutions representing multispecies sequencial competition can be predictable with high probability. In this paper, we show that it occurs because the corresponding "heteroclinic…

Dynamical Systems · Mathematics 2017-10-25 Alexandre A. P. Rodrigues

In considering a social network, there are cases where people is transferred to another place. Then the physical (direct) relations among nodes are lost by the movement. In terms of a network theory, some nodes break the present connections…

Physics and Society · Physics 2007-05-23 Norihito Toyota
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