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Physical systems driven away from equilibrium by an external controller dissipate heat to the environment; the excess entropy production in the thermal reservoir can be interpreted as a "cost" to transform the system in a finite time. The…

Statistical Mechanics · Physics 2024-12-31 Jérémie Klinger , Grant M. Rotskoff

Traditional quantum thermodynamic frameworks associate work to energy exchanges induced by unitary transformations generated by external controls, and heat to energy exchanges induced by bath interaction. Recently, a framework was…

Quantum Physics · Physics 2026-01-06 Tiago F. F. Santos , Camille Latune

We develop a perturbation theory of quantum (and classical) master equations with slowly varying parameters, applicable to systems which are externally controlled on a time scale much longer than their characteristic relaxation time. We…

Quantum Physics · Physics 2017-08-09 Vasco Cavina , Andrea Mari , Vittorio Giovannetti

Chemical and biological networks can describe a wide variety of processes, from gene regulatory networks to biochemical oscillations. Modeled by chemical master equations, these processes are inherently stochastic, as fluctuations dominate…

Statistical Mechanics · Physics 2025-12-23 Schuyler B. Nicholson , Luis Pedro García-Pintos

A pair of systems at different temperatures is a classic environment for a heat engine, which produces work during the relaxation to a common equilibrium. It is generally believed that a direct interaction between the two systems will…

Statistical Mechanics · Physics 2009-10-31 A. E. Allahverdyan , Th. M. Nieuwenhuizen

The emergence of irreversibility in physical processes, despite the fundamentally reversible nature of quantum mechanics, remains an open question in physics. This thesis explores the intricate relationship between quantum mechanics and…

Quantum Physics · Physics 2024-10-25 Alberto Rolandi

Extended from its electromagnetic counterpart, transformation thermodynamics applied to thermal conduction equations can map a virtual geometry into a physical thermal medium, realizing the manipulation of heat flux with almost arbitrarily…

Classical Physics · Physics 2015-06-19 Yichao Liu , Wei Jiang , Sailing He , Yungui Ma

We consider the standard thermodynamic processes with constraints, but with additional uncertainty about the control parameters. Motivated by inductive reasoning, we assign prior distribution that provides a rational guess about likely…

Statistical Mechanics · Physics 2014-04-03 Preety Aneja , Ramandeep S. Johal

We consider the relationship between thermodynamics, fitness, and Darwinian selection in autocatalytic molecular replicators. We uncover a thermodynamic bound that relates fitness, replication rate, and thermodynamic affinity of…

Populations and Evolution · Quantitative Biology 2025-10-07 Artemy Kolchinsky

Deep learning is having a tremendous impact in many areas of computer science and engineering. Motivated by this success, deep neural networks are attracting an increasing attention in many other disciplines, including physical sciences. In…

With the increasing amount of experimental data on gene expression and regulation, there is a growing need for quantitative models to describe the data and relate them to the different contexts. The thermodynamic models reviewed in the…

Molecular Networks · Quantitative Biology 2007-05-23 Lacramioara Bintu , Nicolas E. Buchler , Hernan G. Garcia , Ulrich Gerland , Terence Hwa , Jane' Kondev , Thomas Kuhlman , Rob Phillips

We apply advanced methods of control theory to open quantum systems and we determine finite-time processes which are optimal with respect to thermodynamic performances. General properties and necessary conditions characterizing optimal…

Quantum Physics · Physics 2018-08-01 Vasco Cavina , Andrea Mari , Alberto Carlini , Vittorio Giovannetti

A longstanding challenge in nonequilibrium thermodynamics is to predict the emergence of self-organized behaviours and functionalities typical of living matter. Despite the progress with classical complex systems, it remains far from…

Quantum Physics · Physics 2022-01-13 Thiago Werlang , Maurício Matos , Frederico Brito , Daniel Valente

A fundamental problem in modern thermodynamics is how a molecular-scale machine performs useful work, while operating away from thermal equilibrium without excessive dissipation. To this end, we derive a friction tensor that induces a…

Statistical Mechanics · Physics 2012-05-09 David A. Sivak , Gavin E. Crooks

Artificial micro heat engines are prototypical models to explore and elucidate the mechanisms of energy transduction in a regime that is dominated by fluctuations [1-2]. Micro heat engines realized hitherto mimicked their macroscopic…

Statistical Mechanics · Physics 2016-12-21 Sudeesh Krishnamurthy , Subho Ghosh , Dipankar Chatterji , Rajesh Ganapathy , A. K. Sood

Collective behaviours are frequently observed to self-organise to criticality. Existing proposals to explain these phenomena are fragmented across disciplines and only partially answer the question. This primer compares the underlying,…

Adaptation and Self-Organizing Systems · Physics 2025-08-05 Qianyang Chen , Mikhail Prokopenko

We apply the stochastic thermodynamics formalism to describe the dynamics of systems of complex Langevin and Fokker-Planck equations. We provide in particular a simple and general recipe to calculate thermodynamical currents, dissipated and…

Statistical Mechanics · Physics 2019-01-30 Simone Borlenghi , Anna Delin

A thorough regulation of building energy systems translates in relevant energy savings and in a better comfort for the occupants. Algorithms to predict the thermal state of a building on a certain time horizon with a good confidence are…

Machine Learning · Computer Science 2023-11-01 Alfredo V Clemente , Alessandro Nocente , Massimiliano Ruocco

Thermodynamic computing exploits fluctuations and dissipation in physical systems to efficiently solve various mathematical problems. For example, it was recently shown that certain linear algebra problems can be solved thermodynamically,…

Statistical Mechanics · Physics 2024-01-08 Samuel Duffield , Maxwell Aifer , Gavin Crooks , Thomas Ahle , Patrick J. Coles

Improved understanding of molecular systems has only emphasised the sophistication of networks within the cell. Simultaneously, the advance of nucleic acid nanotechnology, a platform within which reactions can be exquisitely controlled, has…

Molecular Networks · Quantitative Biology 2017-10-03 Thomas E. Ouldridge