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We realize a single particle microscope by using deterministically extracted laser cooled $^{40}$Ca$^+$ ions from a Paul trap as probe particles for transmission imaging. We demonstrate focusing of the ions with a resolution of…

Sampling strategies are important for sparse imaging methodologies, especially those employing the discrete Fourier transform (DFT). Chaotic sensing is one such methodology that employs deterministic, fractal sampling in conjunction with…

Image and Video Processing · Electrical Eng. & Systems 2022-05-23 Jacob M. White , Stuart Crozier , Shekhar S. Chandra

Particle picking is a crucial first step in the computational pipeline of single-particle cryo-electron microscopy (cryo-EM). Selecting particles from the micrographs is difficult especially for small particles with low contrast. As…

Computer Vision and Pattern Recognition · Computer Science 2018-08-06 Ayelet Heimowitz , Joakim Andén , Amit Singer

Noncollinear (NC) magnetism and spin-orbit coupling (SOC) are indispensable for predictive ab initio materials simulations with pronounced relativistic effects and magnetic frustration, yet they significantly increase the cost of…

Multi-task feature learning (MTFL) is a powerful technique in boosting the predictive performance by learning multiple related classification/regression/clustering tasks simultaneously. However, solving the MTFL problem remains challenging…

Machine Learning · Computer Science 2015-05-18 Jie Wang , Jieping Ye

Ab initio modeling of dynamic structure factors (DSF) and related density response properties in the warm dense matter (WDM) regime is a challenging computational task. The DSF, convolved with a probing X-ray beam and instrument function,…

Particle picking is currently a critical step in the cryo-EM single particle reconstruction pipeline. Despite extensive work on this problem, for many data sets it is still challenging, especially for low SNR micrographs. We present the KLT…

Data Analysis, Statistics and Probability · Physics 2019-12-16 Amitay Eldar , Boris Landa , Yoel Shkolnisky

Density Functional Theory (DFT) sees prominent use in computational chemistry and physics, however, problems due to the self-interaction error (SIE) pose additional challenges to obtaining qualitatively correct results. An unphysical energy…

Chemical Physics · Physics 2023-02-08 Dale R. Lonsdale , Lars Goerigk

Multi-Target Tracking (MTT) is foundational for radar, defense, and autonomous systems, where tracking accuracy directly affects decision-making and safety. For linear systems with Gaussian process and measurement noise, the Kalman filter…

Optimization and Control · Mathematics 2025-11-05 Priyank Behera , C. Robert Kenley

This paper conveys attitude and rate estimation without rate sensors by performing a critical comparison, validated by extensive simulations. The two dominant approaches to facilitate attitude estimation are based on stochastic and…

Systems and Control · Electrical Eng. & Systems 2021-12-10 Nikolaos Koumpis , Panagiotis Panagiotou , Ioannis Arvanitakis

Sample selection is an effective strategy to mitigate the effect of label noise in robust learning. Typical strategies commonly apply the small-loss criterion to identify clean samples. However, those samples lying around the decision…

Computer Vision and Pattern Recognition · Computer Science 2022-08-25 Qi Wei , Haoliang Sun , Xiankai Lu , Yilong Yin

Nanoparticles (NPs) have proven their applicability in biosensing, drug delivery, and photo-thermal therapy, but their performance depends critically on the distribution and number of functional groups on their surface. When studying…

We present a machine learning algorithm for the prediction of molecule properties inspired by ideas from density functional theory. Using Gaussian-type orbital functions, we create surrogate electronic densities of the molecule from which…

Chemical Physics · Physics 2019-11-27 Michael Eickenberg , Georgios Exarchakis , Matthew Hirn , Stéphane Mallat , Louis Thiry

Density functional theory (DFT) provides convenient electronic structure methods for the study of molecular systems and materials. Regular Kohn-Sham DFT calculations rely on unitary transformations to determine the ground-state electronic…

Chemical Physics · Physics 2022-10-10 Greta Jacobson , Juan M. Marmolejo-Tejada , Martín A. Mosquera

We experimentally demonstrate nanoscopic transmission microscopy relying on a deterministic single particle source. This increases the signal-to-noise ratio with respect to conventional microscopy methods, which employ Poissonian particle…

Computational virtual high-throughput screening (VHTS) with density functional theory (DFT) and machine-learning (ML)-acceleration is essential in rapid materials discovery. By necessity, efficient DFT-based workflows are carried out with a…

Materials Science · Physics 2021-06-25 Chenru Duan , Shuxin Chen , Michael G. Taylor , Fang Liu , Heather J. Kulik

Density Functional Theory (DFT) is a pivotal method within quantum chemistry and materials science, with its core involving the construction and solution of the Kohn-Sham Hamiltonian. Despite its importance, the application of DFT is…

Understanding protein flexibility and its dynamic interactions with other molecules is essential for studying protein function. Although cryogenic electron microscopy(cryo-EM) provides an opportunity to observe macromolecular dynamics…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Bintao He , Yiran Cheng , Hongjia Li , Xiang Gao , Xin Gao , Fa Zhang , Renmin Han

Static electric response properties of atoms and molecules are reported within the real-space Cartesian grid implementation of pseudopotential Kohn-Sham (KS) density functional theory (DFT). A detailed systematic investigation is made for a…

Chemical Physics · Physics 2019-04-26 Tanmay Mandal , Abhisek Ghosal , Amlan K. Roy

Single-beam scanning microscopy (SBSM) is one of the most robust strategies for commercial optical systems. Although structured illumination combined with Fourier-domain spatial spectrum fusion can enhance SBSM resolution beyond the…

Optics · Physics 2025-07-15 Yongtao Liu , Tianxiao Wu , Xiao Zhou , Fan Wang