Related papers: Lower bounds for approximation schemes for Closest…
We consider the general problem of the Longest Common Subsequence (LCS) on weighted sequences. Weighted sequences are an extension of classical strings, where in each position every letter of the alphabet may occur with some probability.…
Many problems in bioinformatics are about finding strings that approximately represent a collection of given strings. We look at more general problems where some input strings can be classified as outliers. The Close to Most Strings problem…
The problem of finding a center string that is `close' to every given string arises and has many applications in computational biology and coding theory. This problem has two versions: the Closest String problem and the Closest Substring…
We study classic scheduling problems on uniformly related machines. Efficient polynomial time approximation schemes (EPTAS's) are fast and practical approximation schemes. New methods and techniques are essential in developing such improved…
We study several questions related to diversifying search results. We give improved approximation algorithms in each of the following problems, together with some lower bounds. - We give a polynomial-time approximation scheme (PTAS) for a…
We propose an $\widetilde{O}(n + 1/\eps)$-time FPTAS (Fully Polynomial-Time Approximation Scheme) for the classical Partition problem. This is the best possible (up to a polylogarithmic factor) assuming SETH (Strong Exponential Time…
We consider the SUBSET SUM problem and its important variants in this paper. In the SUBSET SUM problem, a (multi-)set $X$ of $n$ positive numbers and a target number $t$ are given, and the task is to find a subset of $X$ with the maximal…
The main results of this paper provide an Efficient Polynomial-Time Approximation Scheme (EPTAS) for approximating the genus (and non-orientable genus) of dense graphs. By dense we mean that $|E(G)|\ge \alpha |V(G)|^2$ for some fixed…
We study the fundamental problem of finding the best string to represent a given set, in the form of the Closest String problem: Given a set $X \subseteq \Sigma^d$ of $n$ strings, find the string $x^*$ minimizing the radius of the smallest…
We study clustering problems such as k-Median, k-Means, and Facility Location in graphs of low highway dimension, which is a graph parameter modeling transportation networks. It was previously shown that approximation schemes for these…
Pruhs and Woeginger prove the existence of FPTAS's for a general class of minimization and maximization subset selection problems. Without losing generality from the original framework, we prove how better asymptotic worst-case running…
In this paper, we propose a general framework to design {efficient} polynomial time approximation schemes (EPTAS) for fundamental stochastic combinatorial optimization problems. Given an error parameter $\epsilon>0$, such algorithmic…
The closest string problem is an NP-hard problem, whose task is to find a string that minimizes maximum Hamming distance to a given set of strings. This can be reduced to an integer program (IP). However, to date, there exists no known…
We revisit various PTAS's (Polynomial Time Approximation Schemes) for minimization versions of dense problems, and show that they can be performed with sublinear query complexity. This means that not only do we obtain a…
We consider the classical scheduling problem on parallel identical machines to minimize the makespan, and achieve the following results under the Exponential Time Hypothesis (ETH) 1. The scheduling problem on a constant number $m$ of…
The interval subset sum problem (ISSP) is a generalization of the well-known subset sum problem. Given a set of intervals $\left\{[a_{i,1},a_{i,2}]\right\}_{i=1}^n$ and a target integer $T,$ the ISSP is to find a set of integers, at most…
In the restricted assignment problem, the input consists of a set of machines and a set of jobs each with a processing time and a subset of eligible machines. The goal is to find an assignment of the jobs to the machines minimizing the…
Counting the independent sets of a graph is a classical #P-complete problem, even in the bipartite case. We give an exponential-time approximation scheme for this problem which is faster than the best known algorithm for the exact problem.…
Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…
An important objective in scheduling literature is to minimize the sum of weighted flow times. We are given a set of jobs where each job is characterized by a release time, a processing time, and a weight. Our goal is to find a preemptive…