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Background: Duplication of genes is important for evolution of molecular networks. Many authors have therefore considered gene duplication as a driving force in shaping the topology of molecular networks. In particular it has been noted…

Populations and Evolution · Quantitative Biology 2009-11-13 Jakob Enemark , Kim Sneppen

We develop random graph models where graphs are generated by connecting not only pairs of vertices by edges but also larger subsets of vertices by copies of small atomic subgraphs of arbitrary topology. This allows the for the generation of…

Statistics Theory · Mathematics 2021-04-21 Anatol E. Wegner , Sofia Olhede

I start by reviewing some basic properties of random graphs. I then consider the role of random walks in complex networks and show how they may be used to explain why so many long tailed distributions are found in real data sets. The key…

Statistical Mechanics · Physics 2012-12-11 T. S. Evans

Effectively preserving both the structural and dynamical properties during the reduction of complex networks remains a significant research topic. Existing network reduction methods based on renormalization group or sampling often face…

Social and Information Networks · Computer Science 2025-07-15 Dan Chen , Housheng Su , Yong Wang , Jie Liu

Three models of growing random networks with fitness dependent growth rates are analysed using the rate equations for the distribution of their connectivities. In the first model (A), a network is built by connecting incoming nodes to nodes…

Statistical Mechanics · Physics 2009-11-07 G. Ergun , G. J. Rodgers

We present a network community-detection technique based on properties that emerge from a nature-inspired system of aligning particles. Initially, each vertex is assigned a random-direction unit vector. A nonlinear dynamic law is…

Social and Information Networks · Computer Science 2026-01-27 Filipe Alves Neto Verri , Roberto Alves Gueleri , Qiusheng Zheng , Junbao Zhang , Liang Zhao

We present a network model in which words over a specific alphabet, called {\it structures}, are associated to each node and undirected edges are added depending on some distance between different structures. It is shown that this model can…

Social and Information Networks · Computer Science 2015-05-20 P. Frisco

Edge-centric distributed computations have appeared as a recent technique to improve the shortcomings of think-like-a-vertex algorithms on large scale-free networks. In order to increase parallelism on this model, edge partitioning -…

Data Structures and Algorithms · Computer Science 2018-10-12 Sebastian Schlag , Christian Schulz , Daniel Seemaier , Darren Strash

Many complex systems--from social and communication networks to biological networks and the Internet--are thought to exhibit scale-free structure. However, prevailing explanations rely on the constant addition of new nodes, an assumption…

Adaptation and Self-Organizing Systems · Physics 2022-11-10 Christopher W. Lynn , Caroline M. Holmes , Stephanie E. Palmer

Many phenomena in real world social networks are interpreted as spread of influence between activated and non-activated network elements. These phenomena are formulated by combinatorial graphs, where vertices represent the elements and…

Discrete Mathematics · Computer Science 2024-03-01 Siavash Askari , Manouchehr Zaker

Preferential attachment is an appealing edge generating mechanism for modeling social networks. It provides both an intuitive description of network growth and an explanation for the observed power laws in degree distributions. However,…

Methodology · Statistics 2017-12-21 Phyllis Wan , Tiandong Wang , Richard A. Davis , Sidney I. Resnick

We study directed random graphs (random graphs whose edges are directed) as they evolve in discrete time by the addition of nodes and edges. For two distinct evolution strategies, one that forces the graph to a condition of near acyclicity…

Statistical Mechanics · Physics 2007-05-23 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

Large scale real-world network data such as social and information networks are ubiquitous. The study of such social and information networks seeks to find patterns and explain their emergence through tractable models. In most networks, and…

Social and Information Networks · Computer Science 2015-05-20 Myunghwan Kim , Jure Leskovec

Lots of neural network architectures have been proposed to deal with learning tasks on graph-structured data. However, most of these models concentrate on only node features during the learning process. The edge features, which usually play…

Machine Learning · Computer Science 2021-01-20 Jun Chen , Haopeng Chen

We propose a novel model-selection method for dynamic networks. Our approach involves training a classifier on a large body of synthetic network data. The data is generated by simulating nine state-of-the-art random graph models for dynamic…

Social and Information Networks · Computer Science 2024-05-28 Lourens Touwen , Doina Bucur , Remco van der Hofstad , Alessandro Garavaglia , Nelly Litvak

We propose a growing network model that consists of two tunable mechanisms: growth by merging modules which are represented as complete graphs and a fitness-driven preferential attachment. Our model exhibits the three prominent statistical…

Molecular Networks · Quantitative Biology 2007-07-31 Kazuhiro Takemoto , Chikoo Oosawa

Network science can offer fundamental insights into the structural and functional properties of complex systems. For example, it is widely known that neuronal circuits tend to organize into basic functional topological modules, called…

Adaptation and Self-Organizing Systems · Physics 2022-08-03 Matteo Zambra , Alberto Testolin , Amos Maritan

We introduce a minimal model of small-world growing network generated by attaching to edges. The produced network is a plane graph which exists in real-life world. We obtain the analytic results of degree distribution decaying exponentially…

Statistical Mechanics · Physics 2007-05-23 Zhongzhi Zhang , Lili Rong

While network science has become an indispensable tool for studying complex systems, the conventional use of pairwise links often shows limitations in describing high-order interactions properly. Hypergraphs, where each edge can connect…

Physics and Society · Physics 2024-12-20 Zhao Li , Jing Zhang , Jiqiang Zhang , Guozhong Zheng , Weiran Cai , Li Chen

We analyze a minimal model of a growing network. At each time step, a new vertex is added; then, with probability delta, two vertices are chosen uniformly at random and joined by an undirected edge. This process is repeated for t time…

Statistical Mechanics · Physics 2009-11-07 Duncan S. Callaway , John E. Hopcroft , Jon M. Kleinberg , M. E. J. Newman , Steven H. Strogatz
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